Gene detail

Detail information of GWHGAAZE025763

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG05222.1	1.15708E-56	Transcription factor MYB1R1 [Gossypium arboreum]
Swissprot	tr\|Q8S9H7\|DIV_ANTMA	2E-24	Transcription factor DIVARICATA
trEMBL	tr\|M1AKK4\|M1AKK4_SOLTU	1E-56	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400024756}
TAIR10	AT5G56840.1	2E-34	myb-like transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	67357436	67358544	+
GWHAAZE00000007	mRNA	67357436	67358544	+
GWHAAZE00000007	exon	67357436	67357853	+
GWHAAZE00000007	exon	67358249	67358544	+
GWHAAZE00000007	CDS	67357436	67357853	+
GWHAAZE00000007	CDS	67358249	67358544	+

Transcript Sequence
>GWHTAAZE025797 CTCTCTCTCTCTCTCTCTCTCTCGATGAAGATGAAGATGAAGATGGGAAAAAAGTGCTCACATTGTGGAAAGATAGGTCACAATTCAAGGACTTGCACCAATTACATAGCTACTAGCACTTTTGTTAGTAGTACAACTAGTGGACTACGGCTCTTTGGAGTTCAACTAGTACTTGACATTAATTCTTCTTCTTCTTCTTCTTCCTCTTCTTGTTCTTCAAATTCTTCAATATCAAACTCTAAGATTGACGAGATTATGATGATGAAGAAGACTTTGAGCATGGATTGTTTGTCTTCACACTCAATATCCCCTTCTCCTTCCTCAATACTTCCCATCAATGAATCCTCCTCAGACAAGACTTCGAATTTATGTTCTCTCTCTGATGGCCTCTTAGCTCCACTCCAAGAAAGGAAAAAAGGAGTGGGATGGACAAAAGAGGAACATCGGAGATTTTTAGAGGGATTGGAAAAGCTGGGGAAAGGAGATTGGAGAGGAATCTCAAAGCACTTTGTGAGCACAAGAAATCCAACCCAAGTTGCCAGCCATGCCCAGAAGTACTTTCTCCGGAACTCATCTAATAATACTCGCCCAAACATGCACAAGAAGCGCCGCTCCAGCCTCTTTGACATGGTACTTGCATATATATATATATACACGCATATGAAAACGATAGATTCAAATATGGGTTATTTGCGTAAAAATATACATCTGTGA

Network for GWHGAAZE025763

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	143	186	8.30E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.911
	SRR3591706	second leaf	34.535
	SRR3591707	mature leaf	13.568
	SRR3591708	Shoot apex	32.077
	SRR3591709	Stem	4.349
	SRR3591710	White floral bud	1.986
	SRR3591711	White flower	2.155
	SRR3591712	Green floral bud	9.703
	SRR3591713	Yellow flower	0.153
SRP173429	SRR8316895	Juvenile bud stage	10.433
	SRR8316896	Juvenile bud stage	16.503
	SRR8316897	Juvenile bud stage	5.806
	SRR8316894	Third green stage	10.724
	SRR8316900	Third green stage	47.898
	SRR8316901	Third green stage	44.553
	SRR8316898	Complete white stage	12.444
	SRR8316899	Complete white stage	57.054
	SRR8316903	Complete white stage	19.062
	SRR8316902	Silver flowering stage	4.195
	SRR8316904	Silver flowering stage	6.755
	SRR8316905	Silver flowering stage	1.706
	SRR8316906	Gold flowering stage	4.561
	SRR8316907	Gold flowering stage	2.872
	SRR8316908	Gold flowering stage	7.700
SRP132670	SRR6706286	Control	29.564
	SRR6706287	Light intensity 50%	26.826
	SRR6706288	Light intensity 20%	27.986
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.978
	CNS0095593	Slightly white alabastrum(diploid) 2	17.207
	CNS0095594	Slightly white alabastrum(diploid) 3	12.796
	CNS0095595	Whole white alabastrum(diploid) 2	29.598
	CNS0095596	Whole white alabastrum(diploid) 3	37.172
	CNS0095597	Whole white alabastrum(diploid) 4	22.977
	CNS0095598	Silvery flower (diploied) 1	21.833
	CNS0095599	Silvery flower (diploied) 2	14.623
	CNS0095600	Silvery flower (diploied) 3	9.125
	CNS0095601	Golden flower (diploid) 1	18.151
	CNS0095602	Golden flower (diploid) 2	18.420
	CNS0095603	Golden flower (diploid) 3	21.616
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.724
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.050
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.583
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.553
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.214
	CNS0095609	Whole white alabastrum(tetraploid) 3	63.478
	CNS0095610	Silvery flower (tetraploid) 1	12.696
	CNS0095611	Silvery flower (tetraploid) 2	14.915
	CNS0095612	Silvery flower (tetraploid) 3	1.154
	CNS0095613	Golden flower (tetraploid) 1	5.867
	CNS0095614	Golden flower (tetraploid) 2	7.829
	CNS0095615	Golden flower (tetraploid) 3	10.220
CRA001975	CRR073297	Stem 1	42.465
	CRR073298	Stem 2	46.287
	CRR073299	Stem 3	46.247
	CRR073300	Leaf 1	58.349
	CRR073301	Leaf 2	56.465
	CRR073302	Leaf 3	60.484
	CRR073303	Juvenile bud 1	83.400
	CRR073304	Juvenile bud 2	52.984
	CRR073305	Juvenile bud 3	67.003
	CRR073306	Third green 1	4.412
	CRR073307	Third green 2	8.443
	CRR073308	Third green 3	9.521
	CRR073309	Second white 1	0.337
	CRR073310	Second white 2	0.298
	CRR073311	Second white 3	0.182
	CRR073312	Silver flowering 1	0.257
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.439
	CRR073315	Gold flowering 1	48.885
	CRR073316	Gold flowering 2	55.052
	CRR073317	Gold flowering 3	50.361
	CRR073318	Tawny withering 1	3.138
	CRR073319	Tawny withering 2	1.491
	CRR073320	Tawny withering 3	1.501