Gene detail

Detail information of GWHGAAZE025767

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011044294.1	7.8194E-120	PREDICTED: cytidine deaminase 1-like [Populus euphratica]
COG	YP_004651685.1	4E-62	cytidine deaminase
Swissprot	tr\|O65896\|CDA1_ARATH	2E-111	Cytidine deaminase 1
trEMBL	tr\|B9H8W4\|B9H8W4_POPTR	4E-120	Cytidine deaminase {ECO:0000256\|PIRNR:PIRNR006334}
TAIR10	AT2G19570.1	3E-68	cytidine deaminase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	67445680	67446726	+
GWHAAZE00000007	mRNA	67445680	67446726	+
GWHAAZE00000007	exon	67445680	67446083	+
GWHAAZE00000007	exon	67446294	67446726	+
GWHAAZE00000007	CDS	67445680	67446083	+
GWHAAZE00000007	CDS	67446294	67446726	+

Transcript Sequence
>GWHTAAZE025801 ATGGCCAAAAACTCAGATCTAAACCTCCTCCAGCTCCTCCCTTCGTTAGTCAAATCTGCCCAAACCCTAGCCCGTTCACCAATCTCCAACTTCCCCGTAGGCGCCGTTGGATTAGGATCCACCGGCCGTATTTTCACCGGCGTTAACCTCGAGTTCCCCGGCTTACCGCTCCACCACTCCGTCCACGCCGAGCAGTTCCTCATCACCAACCTTGCCGTCCACGGCGAGCCTCGCCTTCGGTACCTCGCCGTCTCCGCCGCCCCTTGCGGTCACTGCCGCCAGTTCCTCCAGGAACTCCGGTGTGCGTCGGATGTACAGTTTCTCATCACGGATGGAGGATCTGAAAACCTTGATTTCAAGCCACTTTTCGAGATTCTTCCGAATCCTTTCGGTCCTCGAGATCTATTGAACAATGGCTTATCATTATCAAATCAATTAGATGAACAATGTAATGGCACTGTTTGCGAATTATTGGCGAAGAATGAATTTGAATTGAAAAATTTGGCACTGAAAGCTGCTAATAATTCGCATGCTCCATATAGTGAAAGCCCATCAGGAGTGGCGTTAATGGATTGTGATGGGGGAATATACAGGGGTTCATACATGGAGTCGGCGGCGTATAATCCTAGTTTGGGGCCGGTACAGGCGGCGCTGGTGGCGTATGTGGCAGGAGGAGGTGGTGGCTATGAGAGGATAGTGGCGGCGGTGCTGGTGGAGAAGGGGGGAGCAGTGGTGAGGCAAGAGGATACTGCTAGGTTGCTGTTGAAGGTGATTTCACCTAAATGTGAATTTAGGGTTTTTCATTGTGATGCATTGTCATCTAATGGATGCAAATGA

Network for GWHGAAZE025767

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00383.24	dCMP_cyt_deam_1	20	101	6.20E-13
PF08211.13	dCMP_cyt_deam_2	124	252	1.40E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01489	cdd, CDA	Metabolic pathways	map01100
		Pyrimidine metabolism	map00240
		Drug metabolism - other enzymes	map00983

Gene Ontology

GO term	Ontology	Name
GO:0009972	biological_process	cytidine deamination
GO:0003824	molecular_function	catalytic activity
GO:0008270	molecular_function	zinc ion binding
GO:0016787	molecular_function	hydrolase activity
GO:0004126	molecular_function	cytidine deaminase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.966
	SRR3591706	second leaf	18.660
	SRR3591707	mature leaf	14.599
	SRR3591708	Shoot apex	27.061
	SRR3591709	Stem	35.308
	SRR3591710	White floral bud	88.267
	SRR3591711	White flower	68.292
	SRR3591712	Green floral bud	49.489
	SRR3591713	Yellow flower	101.574
SRP173429	SRR8316895	Juvenile bud stage	14.265
	SRR8316896	Juvenile bud stage	13.353
	SRR8316897	Juvenile bud stage	6.796
	SRR8316894	Third green stage	7.166
	SRR8316900	Third green stage	21.258
	SRR8316901	Third green stage	26.643
	SRR8316898	Complete white stage	37.121
	SRR8316899	Complete white stage	77.411
	SRR8316903	Complete white stage	51.921
	SRR8316902	Silver flowering stage	41.462
	SRR8316904	Silver flowering stage	57.328
	SRR8316905	Silver flowering stage	28.856
	SRR8316906	Gold flowering stage	85.020
	SRR8316907	Gold flowering stage	83.931
	SRR8316908	Gold flowering stage	75.145
SRP132670	SRR6706286	Control	46.963
	SRR6706287	Light intensity 50%	51.523
	SRR6706288	Light intensity 20%	50.245
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.768
	CNS0095593	Slightly white alabastrum(diploid) 2	27.314
	CNS0095594	Slightly white alabastrum(diploid) 3	32.008
	CNS0095595	Whole white alabastrum(diploid) 2	20.924
	CNS0095596	Whole white alabastrum(diploid) 3	22.218
	CNS0095597	Whole white alabastrum(diploid) 4	34.434
	CNS0095598	Silvery flower (diploied) 1	31.731
	CNS0095599	Silvery flower (diploied) 2	34.025
	CNS0095600	Silvery flower (diploied) 3	91.044
	CNS0095601	Golden flower (diploid) 1	40.606
	CNS0095602	Golden flower (diploid) 2	89.006
	CNS0095603	Golden flower (diploid) 3	88.451
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.700
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.656
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.714
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.123
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.519
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.039
	CNS0095610	Silvery flower (tetraploid) 1	106.344
	CNS0095611	Silvery flower (tetraploid) 2	117.485
	CNS0095612	Silvery flower (tetraploid) 3	53.893
	CNS0095613	Golden flower (tetraploid) 1	99.490
	CNS0095614	Golden flower (tetraploid) 2	113.475
	CNS0095615	Golden flower (tetraploid) 3	217.343
CRA001975	CRR073297	Stem 1	24.862
	CRR073298	Stem 2	21.400
	CRR073299	Stem 3	26.403
	CRR073300	Leaf 1	22.376
	CRR073301	Leaf 2	27.578
	CRR073302	Leaf 3	26.573
	CRR073303	Juvenile bud 1	32.884
	CRR073304	Juvenile bud 2	60.547
	CRR073305	Juvenile bud 3	37.472
	CRR073306	Third green 1	163.238
	CRR073307	Third green 2	139.682
	CRR073308	Third green 3	129.700
	CRR073309	Second white 1	57.193
	CRR073310	Second white 2	73.684
	CRR073311	Second white 3	54.408
	CRR073312	Silver flowering 1	37.422
	CRR073313	Silver flowering 2	30.092
	CRR073314	Silver flowering 3	26.493
	CRR073315	Gold flowering 1	22.021
	CRR073316	Gold flowering 2	44.082
	CRR073317	Gold flowering 3	27.683
	CRR073318	Tawny withering 1	41.583
	CRR073319	Tawny withering 2	52.382
	CRR073320	Tawny withering 3	30.428