Gene detail

Detail information of GWHGAAZE025792

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006426587.1	0	hypothetical protein CICLE_v10025724mg [Citrus clementina]
COG	YP_002461804.1	6E-99	DEAD/DEAH box helicase
Swissprot	tr\|Q40468\|IF415_TOBAC	0	Eukaryotic initiation factor 4A-15
trEMBL	tr\|A0A067FG88\|A0A067FG88_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO65150.1}
TAIR10	AT3G13920.1	0	eukaryotic translation initiation factor 4A1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	67918880	67922364	-
GWHAAZE00000007	mRNA	67918880	67922364	-
GWHAAZE00000007	exon	67918880	67919515	-
GWHAAZE00000007	exon	67920980	67921410	-
GWHAAZE00000007	exon	67921998	67922104	-
GWHAAZE00000007	exon	67922297	67922364	-
GWHAAZE00000007	CDS	67922297	67922364	-
GWHAAZE00000007	CDS	67921998	67922104	-
GWHAAZE00000007	CDS	67920980	67921410	-
GWHAAZE00000007	CDS	67918880	67919515	-

Transcript Sequence
>GWHTAAZE025826 ATGGCTGGTATGGCACCAGAGGGATCGCAGTTTGATGCTCGTCAATTTGATACCAAAATGAATGAGTTGCTTTCAACTGACGGGCAAGATTTCTTTACATCATATGACGAAGTTTATGATAGTTTTGATGCGATGGGTTTGCAAGAGAACCTCTTGAGGGGCATCTATGCATATGGTTTCGAAAAACCCTCGGCTATCCAACAAAGGGGAATTGTCCCCTTCTGCAAGGGTCTTGATGTCATTCAACAGGCTCAGTCCGGAACTGGAAAAACAGCGACTTTTTGCTCGGGTATCCTTCAACAACTTGACTATGGGATAGTGGAATGCCAGGCCTTGGTTTTGGCTCCGACACGTGAGCTTGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGAGACTACCTCGGTGTGAAGGTGCATGCTTGTGTTGGTGGGACCAGTGTTCGTGAGGACCAGAGGATTCTTTCAAGCGGGGTCCATGTTGTTGTTGGGACCCCTGGGCGTGTATTTGATATGCTGCGAAGGCAGTCGCTTCGTCCCGATTACATTAAGATGTTTGTACTTGATGAGGCTGATGAGATGCTTTCACGAGGTTTCAAGGATCAGATCTACGATATTTTCCAGCTCCTGCCCTCGAAAGTTCAAGTTGGTGTGTTCTCAGCCACAATGCCACCAGAGGCCCTTGAGATTACAAGGAAGTTCATGAACAAACCCGTGAGAATCCTTGTAAAACGCGATGAACTTACCCTCGAAGGTATCAAACAATTCTACGTCAACGTTGAAAAAGAAGAATGGAAGCTCGAGACCCTATGTGATCTTTATGAGACGCTAGCCATCACCCAAAGCGTGATATTTGTGAACACGCGCCGAAAGGTTGACTGGCTAACCGAAAAGATGAGGAGCCGTGATCACACAGTCTCAGCCACACATGGAGACATGGACCAGAACACGAGGGACATTATTATGCGCGAATTCCGTTCTGGGTCCTCGCGTGTTCTCATCACCACAGATCTTTTGGCCCGTGGAATCGACGTTCAGCAAGTGTCACTTGTTATAAACTATGATCTTCCTACTCAACCGGAGAACTATCTCCACAGGATCGGTCGAAGTGGGCGGTTTGGGAGAAAGGGTGTCGCCATAAATTTCGTAACAAAGGATGATGAGAGGATGCTGTTTGATATACAGAAGTTCTACAACGTGGTGGTGGAGGAGTTGCCATCGAACGTTGCTGATCTCCTCTAA

Network for GWHGAAZE025792

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	65	226	1.00E-39
PF00271.32	Helicase_C	266	374	3.80E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03257	EIF4A	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.964
	SRR3591706	second leaf	24.408
	SRR3591707	mature leaf	39.376
	SRR3591708	Shoot apex	31.335
	SRR3591709	Stem	45.790
	SRR3591710	White floral bud	22.983
	SRR3591711	White flower	26.524
	SRR3591712	Green floral bud	48.624
	SRR3591713	Yellow flower	24.225
SRP173429	SRR8316895	Juvenile bud stage	23.394
	SRR8316896	Juvenile bud stage	42.304
	SRR8316897	Juvenile bud stage	22.151
	SRR8316894	Third green stage	15.294
	SRR8316900	Third green stage	53.321
	SRR8316901	Third green stage	52.007
	SRR8316898	Complete white stage	4.923
	SRR8316899	Complete white stage	30.417
	SRR8316903	Complete white stage	10.583
	SRR8316902	Silver flowering stage	6.942
	SRR8316904	Silver flowering stage	7.498
	SRR8316905	Silver flowering stage	4.312
	SRR8316906	Gold flowering stage	20.883
	SRR8316907	Gold flowering stage	12.806
	SRR8316908	Gold flowering stage	23.589
SRP132670	SRR6706286	Control	40.068
	SRR6706287	Light intensity 50%	38.243
	SRR6706288	Light intensity 20%	36.205
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	49.703
	CNS0095593	Slightly white alabastrum(diploid) 2	52.085
	CNS0095594	Slightly white alabastrum(diploid) 3	55.263
	CNS0095595	Whole white alabastrum(diploid) 2	74.861
	CNS0095596	Whole white alabastrum(diploid) 3	82.422
	CNS0095597	Whole white alabastrum(diploid) 4	73.772
	CNS0095598	Silvery flower (diploied) 1	30.797
	CNS0095599	Silvery flower (diploied) 2	31.708
	CNS0095600	Silvery flower (diploied) 3	32.631
	CNS0095601	Golden flower (diploid) 1	30.430
	CNS0095602	Golden flower (diploid) 2	36.832
	CNS0095603	Golden flower (diploid) 3	39.148
	CNS0095604	Slightly white alabastrum(tetraploid) 1	90.731
	CNS0095605	Slightly white alabastrum(tetraploid) 2	85.654
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.834
	CNS0095607	Whole white alabastrum(tetraploid) 1	107.698
	CNS0095608	Whole white alabastrum(tetraploid) 2	99.431
	CNS0095609	Whole white alabastrum(tetraploid) 3	67.289
	CNS0095610	Silvery flower (tetraploid) 1	32.610
	CNS0095611	Silvery flower (tetraploid) 2	38.765
	CNS0095612	Silvery flower (tetraploid) 3	11.975
	CNS0095613	Golden flower (tetraploid) 1	26.248
	CNS0095614	Golden flower (tetraploid) 2	38.034
	CNS0095615	Golden flower (tetraploid) 3	32.614
CRA001975	CRR073297	Stem 1	36.313
	CRR073298	Stem 2	34.537
	CRR073299	Stem 3	38.874
	CRR073300	Leaf 1	60.278
	CRR073301	Leaf 2	49.084
	CRR073302	Leaf 3	39.729
	CRR073303	Juvenile bud 1	47.054
	CRR073304	Juvenile bud 2	33.353
	CRR073305	Juvenile bud 3	30.990
	CRR073306	Third green 1	10.942
	CRR073307	Third green 2	12.796
	CRR073308	Third green 3	10.396
	CRR073309	Second white 1	13.279
	CRR073310	Second white 2	11.200
	CRR073311	Second white 3	9.088
	CRR073312	Silver flowering 1	13.117
	CRR073313	Silver flowering 2	15.688
	CRR073314	Silver flowering 3	12.015
	CRR073315	Gold flowering 1	22.453
	CRR073316	Gold flowering 2	18.694
	CRR073317	Gold flowering 3	18.970
	CRR073318	Tawny withering 1	53.874
	CRR073319	Tawny withering 2	40.072
	CRR073320	Tawny withering 3	38.215