Gene detail

Detail information of GWHGAAZE025794

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010087709.1	0	Eukaryotic initiation factor 4A-8 [Morus notabilis]
COG	YP_002461804.1	4E-99	DEAD/DEAH box helicase
Swissprot	tr\|P41381\|IF4A8_TOBAC	0	Eukaryotic initiation factor 4A-8
trEMBL	tr\|W9QZE3\|W9QZE3_9ROSA	0	Eukaryotic initiation factor 4A-8 {ECO:0000313\|EMBL:EXB29697.1}
TAIR10	AT3G13920.1	0	eukaryotic translation initiation factor 4A1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	67946700	67948479	-
GWHAAZE00000007	mRNA	67946700	67948479	-
GWHAAZE00000007	exon	67946700	67947335	-
GWHAAZE00000007	exon	67947440	67947870	-
GWHAAZE00000007	exon	67948147	67948245	-
GWHAAZE00000007	exon	67948473	67948479	-
GWHAAZE00000007	CDS	67948473	67948479	-
GWHAAZE00000007	CDS	67948147	67948245	-
GWHAAZE00000007	CDS	67947440	67947870	-
GWHAAZE00000007	CDS	67946700	67947335	-

Transcript Sequence
>GWHTAAZE025828 ATGGCGGCTGATGGGAAAGATTTCTTTACACCATATGATGAGGTTCACGAGACTTTCGATTCCATGGGTTTGAAGGAGAGCCTTTTGAGGGGTATCTATGCATACGGTTTCGAAAAGCCTTCAGCGATTCAGCAAAAGGGAATCGTACCCTTCTGTAAGGGTCTTGATGTAATCCAACAGGCGCAGTCTGGAACCGGAAAAACAGCAACTTTTTGCTCCGGTATCCTTCAGCAGCTCGACTATGATGTAGTTAAATGCCAAGCTTTGGTTTTGGCACCTACTCGCGAGCTTGCAAAACAGATTGACAGGGTTATGCGCGCACTTGGAGACTACCTTGGCGTGAAGGTACACGCTTGTATCGGTGGAACCAGTGTTAGTGAGGACCACAAAACTCTTTCAGGTGGGGTTCATGTTGTTGTGGGAACTCCTGGGCGCGTATTTGACATGCTGCGAAGAAAAACACTTCCTGCTGATTACATTAAGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCAAAAGGTTTCAAGGATCAGATTTACGATATTTTCCAGCTCATGCCCTCAAAGATTCAAGTCGGTGTGTTCTCAGCCACAATGCCACCCGAGGCCCTTGAGATCACAAAAAAGTTCATGAACAAACCTGTGAGAATCCTCATAAAGCGTGATGAACTAACCCTCGAAGGTATCAAGCAATTCTACATCGATGTTGAAAAGGAAGAATGGAAGCTCGAGACCCTATGCGATCTTTACGAGACAGTAGCCATCACCCAAAGCGTCATCTTTGTGAACACGCGCCGAAAAGTCGACTGGCTAACTGACAAGATGAGTAGCCGCGATCACACAGTCTCAGCAACACACGGAGACATGGACCAGAATGCAAGAGACATTATCATGAGTGAGTTCCGGTCTGGATCATCACGTGTTCTCATCACTACAGATCTTTTGGCACGTGGGATCGATGTTCAGCAAGTGTCGCTTGTTATAAACTACGATCTTCCTACTCAACCGGAGAACTATCTCCACAGGATCGGAAGAAGTGGGCGGTTTGGAAGAAAGGGTGTTGCTGTTAACTTTGTGACCAAGGAAGATGAAAGGATGCTGTTTGATATACAAAAGTTTTACAATGTGGTGGTCGAGGAGCTCCCGGCTAACGTTGCTGATCTCCTCTAA

Network for GWHGAAZE025794

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	42	203	7.40E-40
PF00271.32	Helicase_C	243	351	5.50E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03257	EIF4A	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.730
	SRR3591706	second leaf	0.065
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.179
	SRR3591709	Stem	0.014
	SRR3591710	White floral bud	0.009
	SRR3591711	White flower	0.006
	SRR3591712	Green floral bud	0.206
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.031
	SRR8316896	Juvenile bud stage	0.063
	SRR8316897	Juvenile bud stage	0.030
	SRR8316894	Third green stage	0.004
	SRR8316900	Third green stage	0.126
	SRR8316901	Third green stage	0.081
	SRR8316898	Complete white stage	0.029
	SRR8316899	Complete white stage	0.062
	SRR8316903	Complete white stage	0.003
	SRR8316902	Silver flowering stage	0.013
	SRR8316904	Silver flowering stage	0.012
	SRR8316905	Silver flowering stage	0.006
	SRR8316906	Gold flowering stage	0.009
	SRR8316907	Gold flowering stage	0.030
	SRR8316908	Gold flowering stage	0.003
SRP132670	SRR6706286	Control	0.044
	SRR6706287	Light intensity 50%	0.185
	SRR6706288	Light intensity 20%	0.158
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.119
	CNS0095593	Slightly white alabastrum(diploid) 2	0.546
	CNS0095594	Slightly white alabastrum(diploid) 3	0.072
	CNS0095595	Whole white alabastrum(diploid) 2	0.115
	CNS0095596	Whole white alabastrum(diploid) 3	0.003
	CNS0095597	Whole white alabastrum(diploid) 4	0.067
	CNS0095598	Silvery flower (diploied) 1	0.007
	CNS0095599	Silvery flower (diploied) 2	0.071
	CNS0095600	Silvery flower (diploied) 3	0.021
	CNS0095601	Golden flower (diploid) 1	0.032
	CNS0095602	Golden flower (diploid) 2	0.034
	CNS0095603	Golden flower (diploid) 3	0.115
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.123
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.145
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.291
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.016
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.103
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.187
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.055
	CNS0095612	Silvery flower (tetraploid) 3	0.048
	CNS0095613	Golden flower (tetraploid) 1	0.053
	CNS0095614	Golden flower (tetraploid) 2	0.020
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.279
	CRR073298	Stem 2	0.072
	CRR073299	Stem 3	0.050
	CRR073300	Leaf 1	0.306
	CRR073301	Leaf 2	0.311
	CRR073302	Leaf 3	0.122
	CRR073303	Juvenile bud 1	0.609
	CRR073304	Juvenile bud 2	0.046
	CRR073305	Juvenile bud 3	0.234
	CRR073306	Third green 1	0.229
	CRR073307	Third green 2	0.188
	CRR073308	Third green 3	0.357
	CRR073309	Second white 1	0.021
	CRR073310	Second white 2	0.099
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.221
	CRR073313	Silver flowering 2	0.114
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.078
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.027
	CRR073318	Tawny withering 1	0.061
	CRR073319	Tawny withering 2	0.519
	CRR073320	Tawny withering 3	0.867