Gene detail

Detail information of GWHGAAZE025795

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003533770.1	0	PREDICTED: eukaryotic initiation factor 4A-15-like isoformX1 [Glycine max]
COG	YP_002461804.1	5E-99	DEAD/DEAH box helicase
Swissprot	tr\|Q40468\|IF415_TOBAC	0	Eukaryotic initiation factor 4A-15
trEMBL	tr\|I1L1K7\|I1L1K7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G07530.4}
TAIR10	AT3G13920.1	0	eukaryotic translation initiation factor 4A1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	67953186	67955248	-
GWHAAZE00000007	mRNA	67953186	67955248	-
GWHAAZE00000007	exon	67953186	67953821	-
GWHAAZE00000007	exon	67954344	67954774	-
GWHAAZE00000007	exon	67954885	67954991	-
GWHAAZE00000007	exon	67955181	67955248	-
GWHAAZE00000007	CDS	67955181	67955248	-
GWHAAZE00000007	CDS	67954885	67954991	-
GWHAAZE00000007	CDS	67954344	67954774	-
GWHAAZE00000007	CDS	67953186	67953821	-

Transcript Sequence
>GWHTAAZE025829 ATGGCAGGTCAGGCACCAGAAGGATCCCAGTTTGATGCTCGTCAATTCGACACCAAAATGAATGAATTACTCTCAGCTGACGGAGGTGATTTCATTACATCATACGATGAGGTTCACGAGACCTTTGATTTGATGGGCTTGAAGGAGAACCTTTTGAGGGGCATCTATGCATATGGTTTTGAAAAGCCTTCAGCAATTCAGCAAAGGGGAATTGTACCCTTCTGCAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGAACCGGAAAAACAGCAACTTTCTGCTCCGGTATCCTTCAGCAGCTTGACTATGATGTAGTGGAATGCCAGGCCTTGGTTTTGGCCCCAACTCGTGAGCTTGCACAACAGATTGAGAAGGTTATGCGTGCACTTGGTGACTACCTTGGTGTGAAGGTGCACGCTTGTGTTGGTGGAACCAGTGTCCGTGAGGACCAAAGAATTCTCTCGAGTGGGGTCCATGTTGTTGTTGGCACTCCTGGGCGTGTGTTTGATATGCTGCGAAGAAACTCCCTTCGTCCCGATTACATTAAGATGTTTGTGTTGGATGAGGCTGATGAAATGCTCTCGCGAGGTTTCAAGGATCAGATCTATGATATTTTCCAGCTCCTGCCCTCAAAAGTTCAAGTTGGTGTGTTCTCAGCCACAATGCCCCCTGAGGCCCTTGAGATCACAAGGAAGTTCATGAACAAACCCGTGAGGATTCTTGTGAAGCGTGATGAGCTCACCCTAGAAGGTATCAAACAATTTCACGTCAATGTGGAAAAGGAAGACTGGAAGCTGGAGACCCTTTGCGATCTTTACGAAACTCTAGCCATCACCCAAAGTGTCATCTTTGTGAACACACGCCGAAAGGTTGACTGGCTAACCGACAAGATGAGGAGCCGCGATCACACGGTCTCAGCCACACACGGAGACATGGACCAGAACACGAGGGATATAATCATGCGTGAATTCCGTTCCGGATCCTCCCGTGTCCTCATCACCACCGATCTTTTGGCCCGTGGGATTGATGTTCAGCAAGTGTCGCTTGTTATAAACTACGATCTTCCTACTCAACCCGAGAACTATCTCCACAGGATTGGACGAAGTGGGCGGTTTGGGAGAAAGGGTGTTGCTATCAATTTTGTGACCAAGGAAGACGAAAGGATGCTCTTTGATATACAGAAGTTTTACAATGTGGTGGTGGAGGAGCTCCCTGCAAATGTTGCTGATCTCCTCTAA

Network for GWHGAAZE025795

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	65	226	1.10E-39
PF00271.32	Helicase_C	266	374	6.90E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03257	EIF4A	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	525.739
	SRR3591706	second leaf	270.407
	SRR3591707	mature leaf	174.635
	SRR3591708	Shoot apex	504.415
	SRR3591709	Stem	345.794
	SRR3591710	White floral bud	342.570
	SRR3591711	White flower	453.275
	SRR3591712	Green floral bud	440.824
	SRR3591713	Yellow flower	361.092
SRP173429	SRR8316895	Juvenile bud stage	223.679
	SRR8316896	Juvenile bud stage	275.267
	SRR8316897	Juvenile bud stage	154.438
	SRR8316894	Third green stage	127.355
	SRR8316900	Third green stage	414.432
	SRR8316901	Third green stage	391.945
	SRR8316898	Complete white stage	139.453
	SRR8316899	Complete white stage	550.945
	SRR8316903	Complete white stage	220.826
	SRR8316902	Silver flowering stage	142.564
	SRR8316904	Silver flowering stage	156.263
	SRR8316905	Silver flowering stage	71.333
	SRR8316906	Gold flowering stage	238.187
	SRR8316907	Gold flowering stage	235.766
	SRR8316908	Gold flowering stage	252.029
SRP132670	SRR6706286	Control	381.962
	SRR6706287	Light intensity 50%	425.472
	SRR6706288	Light intensity 20%	462.487
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	226.960
	CNS0095593	Slightly white alabastrum(diploid) 2	266.641
	CNS0095594	Slightly white alabastrum(diploid) 3	208.101
	CNS0095595	Whole white alabastrum(diploid) 2	222.930
	CNS0095596	Whole white alabastrum(diploid) 3	216.431
	CNS0095597	Whole white alabastrum(diploid) 4	182.096
	CNS0095598	Silvery flower (diploied) 1	210.624
	CNS0095599	Silvery flower (diploied) 2	200.824
	CNS0095600	Silvery flower (diploied) 3	357.177
	CNS0095601	Golden flower (diploid) 1	186.854
	CNS0095602	Golden flower (diploid) 2	330.686
	CNS0095603	Golden flower (diploid) 3	321.616
	CNS0095604	Slightly white alabastrum(tetraploid) 1	241.353
	CNS0095605	Slightly white alabastrum(tetraploid) 2	202.348
	CNS0095606	Slightly white alabastrum(tetraploid) 3	419.822
	CNS0095607	Whole white alabastrum(tetraploid) 1	137.957
	CNS0095608	Whole white alabastrum(tetraploid) 2	112.900
	CNS0095609	Whole white alabastrum(tetraploid) 3	283.752
	CNS0095610	Silvery flower (tetraploid) 1	273.603
	CNS0095611	Silvery flower (tetraploid) 2	285.471
	CNS0095612	Silvery flower (tetraploid) 3	154.405
	CNS0095613	Golden flower (tetraploid) 1	152.615
	CNS0095614	Golden flower (tetraploid) 2	222.353
	CNS0095615	Golden flower (tetraploid) 3	229.114
CRA001975	CRR073297	Stem 1	519.596
	CRR073298	Stem 2	501.968
	CRR073299	Stem 3	627.025
	CRR073300	Leaf 1	593.850
	CRR073301	Leaf 2	607.049
	CRR073302	Leaf 3	808.903
	CRR073303	Juvenile bud 1	818.443
	CRR073304	Juvenile bud 2	643.679
	CRR073305	Juvenile bud 3	883.296
	CRR073306	Third green 1	297.259
	CRR073307	Third green 2	310.293
	CRR073308	Third green 3	296.740
	CRR073309	Second white 1	333.987
	CRR073310	Second white 2	260.692
	CRR073311	Second white 3	196.427
	CRR073312	Silver flowering 1	232.396
	CRR073313	Silver flowering 2	331.126
	CRR073314	Silver flowering 3	233.303
	CRR073315	Gold flowering 1	269.711
	CRR073316	Gold flowering 2	310.148
	CRR073317	Gold flowering 3	348.075
	CRR073318	Tawny withering 1	709.396
	CRR073319	Tawny withering 2	492.063
	CRR073320	Tawny withering 3	711.331