Detail information of GWHGAAZE025797


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010656491.10PREDICTED: uncharacterized protein LOC100244028 [Vitis vinifera]
COGYP_007146025.13E-13WD40 repeat-containing protein
Swissprottr|Q8L4M1|THOC6_ARATH2E-152THO complex subunit 6
trEMBLtr|A0A061GTD0|A0A061GTD0_THECC0DWD hypersensitive to ABA 1 {ECO:0000313|EMBL:EOY30394.1}
TAIR10AT2G19430.16E-108DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6795923867967524-
GWHAAZE00000007mRNA6795923867967524-
GWHAAZE00000007exon6795923867959327-
GWHAAZE00000007exon6796021267960328-
GWHAAZE00000007exon6796063367960743-
GWHAAZE00000007exon6796086867960980-
GWHAAZE00000007exon6796107467961113-
GWHAAZE00000007exon6796183767961917-
GWHAAZE00000007exon6796210467962157-
GWHAAZE00000007exon6796291667962976-
GWHAAZE00000007exon6796347867963520-
GWHAAZE00000007exon6796407767964153-
GWHAAZE00000007exon6796676867966866-
GWHAAZE00000007exon6796697867967018-
GWHAAZE00000007exon6796711867967524-
GWHAAZE00000007five_prime_UTR6796732567967524-
GWHAAZE00000007CDS6796711867967324-
GWHAAZE00000007CDS6796697867967018-
GWHAAZE00000007CDS6796676867966866-
GWHAAZE00000007CDS6796407767964153-
GWHAAZE00000007CDS6796347867963520-
GWHAAZE00000007CDS6796291667962976-
GWHAAZE00000007CDS6796210467962157-
GWHAAZE00000007CDS6796183767961917-
GWHAAZE00000007CDS6796107467961113-
GWHAAZE00000007CDS6796086867960980-
GWHAAZE00000007CDS6796063367960743-
GWHAAZE00000007CDS6796021267960328-
GWHAAZE00000007CDS6795923867959327-
Transcript Sequence

Network for GWHGAAZE025797

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD402012357.50E-05
PF00400.33WD402582840.075
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K13175THOC6 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.511
SRR3591706second leaf14.653
SRR3591707mature leaf13.540
SRR3591708Shoot apex29.650
SRR3591709Stem29.812
SRR3591710White floral bud27.094
SRR3591711White flower25.272
SRR3591712Green floral bud30.406
SRR3591713Yellow flower24.940
SRP173429 SRR8316895Juvenile bud stage 18.020
SRR8316896Juvenile bud stage 29.993
SRR8316897Juvenile bud stage 12.344
SRR8316894Third green stage 11.097
SRR8316900Third green stage 34.722
SRR8316901Third green stage 30.009
SRR8316898Complete white stage 9.548
SRR8316899Complete white stage 41.387
SRR8316903Complete white stage 15.171
SRR8316902Silver flowering stage6.452
SRR8316904Silver flowering stage10.288
SRR8316905Silver flowering stage4.791
SRR8316906Gold flowering stage 14.692
SRR8316907Gold flowering stage 15.241
SRR8316908Gold flowering stage 25.694
SRP132670SRR6706286Control32.607
SRR6706287Light intensity 50%32.481
SRR6706288Light intensity 20%33.700
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.022
CNS0095593Slightly white alabastrum(diploid) 223.078
CNS0095594Slightly white alabastrum(diploid) 322.458
CNS0095595Whole white alabastrum(diploid) 223.879
CNS0095596Whole white alabastrum(diploid) 323.372
CNS0095597Whole white alabastrum(diploid) 425.818
CNS0095598Silvery flower (diploied) 119.473
CNS0095599Silvery flower (diploied) 218.044
CNS0095600Silvery flower (diploied) 316.367
CNS0095601Golden flower (diploid) 117.004
CNS0095602Golden flower (diploid) 217.283
CNS0095603Golden flower (diploid) 317.058
CNS0095604Slightly white alabastrum(tetraploid) 125.515
CNS0095605Slightly white alabastrum(tetraploid) 224.805
CNS0095606Slightly white alabastrum(tetraploid) 331.139
CNS0095607Whole white alabastrum(tetraploid) 121.846
CNS0095608Whole white alabastrum(tetraploid) 220.443
CNS0095609Whole white alabastrum(tetraploid) 325.425
CNS0095610Silvery flower (tetraploid) 112.087
CNS0095611Silvery flower (tetraploid) 213.402
CNS0095612Silvery flower (tetraploid) 37.545
CNS0095613Golden flower (tetraploid) 17.912
CNS0095614Golden flower (tetraploid) 210.109
CNS0095615Golden flower (tetraploid) 35.867
CRA001975CRR073297Stem 125.639
CRR073298Stem 222.017
CRR073299Stem 323.309
CRR073300Leaf 126.629
CRR073301Leaf 230.099
CRR073302Leaf 322.724
CRR073303Juvenile bud 124.975
CRR073304Juvenile bud 221.433
CRR073305Juvenile bud 331.021
CRR073306Third green 17.280
CRR073307Third green 27.256
CRR073308Third green 37.919
CRR073309Second white 17.512
CRR073310Second white 24.450
CRR073311Second white 35.676
CRR073312Silver flowering 15.760
CRR073313Silver flowering 27.598
CRR073314Silver flowering 35.162
CRR073315Gold flowering 110.279
CRR073316Gold flowering 213.043
CRR073317Gold flowering 38.870
CRR073318Tawny withering 123.570
CRR073319Tawny withering 219.841
CRR073320Tawny withering 327.337