Gene detail

Detail information of GWHGAAZE025800

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006451531.1	0	hypothetical protein CICLE_v10007981mg [Citrus clementina]
COG	YP_001511011.1	1E-24	WD-40 repeat-containing serine/threonin protein kinase
Swissprot	tr\|Q9LE81\|IRE_ARATH	9E-83	Probable serine/threonine protein kinase IRE {ECO:0000305}
trEMBL	tr\|V4UQN1\|V4UQN1_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR64771.1}
TAIR10	AT4G33080.1	0	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	68004759	68013003	+
GWHAAZE00000007	mRNA	68004759	68013003	+
GWHAAZE00000007	exon	68004759	68005070	+
GWHAAZE00000007	exon	68006516	68006690	+
GWHAAZE00000007	exon	68007966	68008049	+
GWHAAZE00000007	exon	68009908	68010149	+
GWHAAZE00000007	exon	68010449	68010692	+
GWHAAZE00000007	exon	68011166	68011245	+
GWHAAZE00000007	exon	68011972	68012056	+
GWHAAZE00000007	exon	68012630	68012761	+
GWHAAZE00000007	exon	68012881	68013003	+
GWHAAZE00000007	five_prime_UTR	68004759	68004891	+
GWHAAZE00000007	CDS	68004892	68005070	+
GWHAAZE00000007	CDS	68006516	68006690	+
GWHAAZE00000007	CDS	68007966	68008049	+
GWHAAZE00000007	CDS	68009908	68010149	+
GWHAAZE00000007	CDS	68010449	68010692	+
GWHAAZE00000007	CDS	68011166	68011245	+
GWHAAZE00000007	CDS	68011972	68012056	+
GWHAAZE00000007	CDS	68012630	68012761	+
GWHAAZE00000007	CDS	68012881	68013003	+

Transcript Sequence
>GWHTAAZE025834 CTTTGCTTCTCTGTCCTCATTCATTTTCATCATATATTATACATATAATATAATTTAGAGAGAGAGAGAGAGAGAGAGAGAAAAGTTATCGTAATCCCTAATCTAGAGAGAGAGGAAGAAGAGGGCCGGGGTTATGGAGAATCAAGAAGATTCCGACAAGGTCACCCCCTTGCCGGAGGATCATGAGGTGGTGGAAGAGCTGGCGGAGGAGCTAGGGTCCAGCTTGACTCTCGAGAGAGCCGCTGCTGCTAAGAAATTCATCGAGAATCACTACAAAGCTCAAATGAAACACATTCAAGAGCGCAAACAAAGGCGCTCAGTGCTTGAAAAGAGGTTAGCAAGTTCAGATGTATCAGCTGAAGAACAAATGAATCTTTTGAAAGATTTGGAGCGCAAGGAGACGGAGTATATACGACTAAAGCGACATAAAATTTGTGTTGATGATTTTGAACTCTTAACCATCATTGGGAGAGGAGCCTTCGGAGAGGTTAGACTATGTAGGGAAAAGAAATCTGGCGATATATATGCAATGAAAAAGTTGAAGAAGTCAGAAATGCTTAGCAGGGGCCAGGTTGAACATGTTAGAGCTGAAAGGAATTTGCTTGCAGAAGTTGCTAGCCACTTCATCGTAAAACTCTATTATTCATTTCAAGATGCCGAATTCTTGTATTTAATAATGGAATACCTGCCTGGTGGTGACATGATGACTTTACTAATGAGAGAAGAGACTTTAACCGAAACAGTGGCTAGATTTTACATTGCACAAAGTGTTCTGGCCATAGAGTCCATTCATAAGCATAACTACATCCACAGAGATATCAAACCCGACAACCTTTTATTGGACCAAAACGGTCATATGAAGCTCTCAGATTTTGGTCTCTGCAAGCCTCTTGACTGTTCAAATTTATCAACTATAAATGAGAATGAAGTTATGGATGGTGATAATTCGAGGCGATCAGTGAATATTAATGGTTATTTCCCTGATAACGGAAAACGAGGATGCTGGAAAAGCCCCCACGAACAACTGCAGCATTGGCAAATGAACAGGAGGACATTGGCCTTTTCAACTGTGGGCACACCTGATTATATTGCTCCGGAGGTGTTATTGAAGAAAGGCTATGGAATGGAGTGCGACTGGTGGTCACTTGGTGCTATAATGTATGAGATGCTTGTTGGTTATCCCCCATTCTACTCCGACGATCCAATAACAACATGCAGAAAGATTGTGCACTGGAAAAATCATTTGAGATTTCCAGAAGACGCAAGGTTGACCCCTGAAGCAAAAGACCTGATCTGTAGGTTGTTGTGTGATGTTGAACACCGGCTAGGTACAGGAGGAGCAGAACAAATAAAAGCTCATCCTTGGTTCAAAGATATTGTATGGGACAAACTCTATGAAATGGAGGCTGCTTTTAAACCAGAGGTGAATGGGGAGCTTGATACTCAAAATTTCATTAAATTTGATGAGGTACGTTGA

Network for GWHGAAZE025800

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	106	256	1.50E-43
PF00069.26	Pkinase	305	412	4.20E-20

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_NDR

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.392
	SRR3591706	second leaf	14.623
	SRR3591707	mature leaf	30.534
	SRR3591708	Shoot apex	16.094
	SRR3591709	Stem	38.470
	SRR3591710	White floral bud	98.276
	SRR3591711	White flower	65.657
	SRR3591712	Green floral bud	60.487
	SRR3591713	Yellow flower	59.579
SRP173429	SRR8316895	Juvenile bud stage	17.826
	SRR8316896	Juvenile bud stage	28.110
	SRR8316897	Juvenile bud stage	12.544
	SRR8316894	Third green stage	12.092
	SRR8316900	Third green stage	44.953
	SRR8316901	Third green stage	38.093
	SRR8316898	Complete white stage	15.413
	SRR8316899	Complete white stage	40.233
	SRR8316903	Complete white stage	26.088
	SRR8316902	Silver flowering stage	19.034
	SRR8316904	Silver flowering stage	32.461
	SRR8316905	Silver flowering stage	13.058
	SRR8316906	Gold flowering stage	53.207
	SRR8316907	Gold flowering stage	50.530
	SRR8316908	Gold flowering stage	53.342
SRP132670	SRR6706286	Control	48.334
	SRR6706287	Light intensity 50%	45.237
	SRR6706288	Light intensity 20%	42.456
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.560
	CNS0095593	Slightly white alabastrum(diploid) 2	18.884
	CNS0095594	Slightly white alabastrum(diploid) 3	23.399
	CNS0095595	Whole white alabastrum(diploid) 2	42.021
	CNS0095596	Whole white alabastrum(diploid) 3	46.462
	CNS0095597	Whole white alabastrum(diploid) 4	55.704
	CNS0095598	Silvery flower (diploied) 1	24.836
	CNS0095599	Silvery flower (diploied) 2	30.338
	CNS0095600	Silvery flower (diploied) 3	53.027
	CNS0095601	Golden flower (diploid) 1	28.878
	CNS0095602	Golden flower (diploid) 2	54.149
	CNS0095603	Golden flower (diploid) 3	54.585
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.761
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.321
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.222
	CNS0095607	Whole white alabastrum(tetraploid) 1	73.599
	CNS0095608	Whole white alabastrum(tetraploid) 2	87.853
	CNS0095609	Whole white alabastrum(tetraploid) 3	59.534
	CNS0095610	Silvery flower (tetraploid) 1	50.772
	CNS0095611	Silvery flower (tetraploid) 2	61.591
	CNS0095612	Silvery flower (tetraploid) 3	59.229
	CNS0095613	Golden flower (tetraploid) 1	28.040
	CNS0095614	Golden flower (tetraploid) 2	42.708
	CNS0095615	Golden flower (tetraploid) 3	42.588
CRA001975	CRR073297	Stem 1	23.536
	CRR073298	Stem 2	18.812
	CRR073299	Stem 3	16.318
	CRR073300	Leaf 1	34.762
	CRR073301	Leaf 2	27.240
	CRR073302	Leaf 3	20.068
	CRR073303	Juvenile bud 1	36.891
	CRR073304	Juvenile bud 2	27.386
	CRR073305	Juvenile bud 3	26.297
	CRR073306	Third green 1	23.453
	CRR073307	Third green 2	22.225
	CRR073308	Third green 3	23.610
	CRR073309	Second white 1	16.328
	CRR073310	Second white 2	25.851
	CRR073311	Second white 3	25.868
	CRR073312	Silver flowering 1	26.854
	CRR073313	Silver flowering 2	23.115
	CRR073314	Silver flowering 3	24.743
	CRR073315	Gold flowering 1	21.751
	CRR073316	Gold flowering 2	15.938
	CRR073317	Gold flowering 3	8.427
	CRR073318	Tawny withering 1	23.948
	CRR073319	Tawny withering 2	22.243
	CRR073320	Tawny withering 3	22.768