Gene detail

Detail information of GWHGAAZE025802

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010090094.1	2.8265E-167	Protein phosphatase 2C 16 [Morus notabilis]
COG	YP_003709340.1	2E-18	serine/threonine PP2C protein phosphatase
Swissprot	tr\|Q9LNP9\|P2C07_ARATH	2E-145	Protein phosphatase 2C 7 (Precursor)
trEMBL	tr\|W9QK21\|W9QK21_9ROSA	1E-167	Protein phosphatase 2C 16 {ECO:0000313\|EMBL:EXB38891.1}
TAIR10	AT1G72770.3	9E-120	homology to ABI1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	68063721	68067498	+
GWHAAZE00000007	mRNA	68063721	68067498	+
GWHAAZE00000007	exon	68063721	68064416	+
GWHAAZE00000007	exon	68065009	68065347	+
GWHAAZE00000007	exon	68065648	68065753	+
GWHAAZE00000007	exon	68067155	68067498	+
GWHAAZE00000007	CDS	68063721	68064416	+
GWHAAZE00000007	CDS	68065009	68065347	+
GWHAAZE00000007	CDS	68065648	68065753	+
GWHAAZE00000007	CDS	68067155	68067474	+
GWHAAZE00000007	three_prime_UTR	68067475	68067498	+

Transcript Sequence
>GWHTAAZE025836 ATGGAGGAGATGTATTCATCAATTGGCATGCCATTCAGTCTGGGAAGTTTGATCTACGACGGCTCGGTGATAAAACCCTGCGCGAAAGTCACCGCAATTGAGCTAATAGCAAACTCGCCAACCTTGTTGTCAAACCCCACTTTGACAAAGCTGCCTTTAGTGTCTATTGTTAGTGAAAGTAAATTTCACAGTATTAACAATTTGTCGAGTGAATTTAGGGTTAGGCCGGTAGCTGTGGATGAAGAAATCGATGAAAGAGAGAATTTTTTAAAGTTAGTGATTGAAAACAGTAACTCTAGCAGCATTTGCGGTGACAAATATATAGCTTTAGAGGTCAATTCCGAGATAAATGCTCTACATAGCATCAATATTGAGAAGAAGATTGAAAATATTGAAACGGGTAAAAATCAATTAGCCTGTTTCCAAAATATGCCTGTTTTGATTCGTGAGGATGAGGAACAGAGTACAAGTAAAAGAAGAAAGCAAATTGGCTTCGATTTTGTACCTCTTTGGGGAGTGAATTCTATCTGTGGAAGGATGTCAGAGATGGAAGATTCCGTTACTACTTTACCACTATTCTTGAGAGTTCCAATTCAAATGCTAACCGATGAACAGATTTCACATCCAAGTAGTCAAAATTTAAGTCACTTGCAAGCCCATTTCTTTGGAGTTTACGATGGACACGGTGGCTCTCAGGTTGCTAATTATTGCCGTGATCGGATACATTTGGCTTTGGCGGAGGAAATCGAATTTGCAAGCAAAAATTTGCATAATGGAAACTCTTATTGGCAAGATCAATGGCAAAAGGCCTTTGTGAGTTGCTTTCAGAAAGTTGACGCTGAGGTTGGAGGACTCCATGAAGGGAATGGTGGGACCACGGATAAGAGGCTCGAACCTATTGCTTCGGAGGCTGTGGGGTCCACAGCCGTGGTTGCTATTGTTTGCCTGACGCATATCATTGTTGCAAATTGCGGTGATTCTAGGGCAGTCCTTTGCCGCGGAAAAGTAGCGGTGCCTTTGTCGGTGGACCACAAACCAAATAGAGAAGATGAGTTTTCGAGGATAGAAGCAGCCGGAGGCAAGGTGATTTATTGGGACGGATACCGTGTTTTGGGTGTGCTTGCAATGTCGAGGTCCATTGGTGACAGGTATTTGAAACCCTACGTTATTCCGGAGCCGGAGGTGGTGTTTGTTTCCCGGGAAAAGGAAGACGAGTGCCTTATTCTAGCGAGCGACGGTCTATGGGACGTGATGACGAATGAGGAGGCTTGTGATTTGGCACGGCGGCGAATCCTTCAATGGCACAAAAAGAATGTAGACGTGCCGTTGAATGAGAGACGTGCTGCCCAAGATGCATCAGAGTACTTAACAAGAATTGCTTTACAAAGGGGAAGCAGTGATAATGTATCTGTGATTGTTGTGGACTTGAAAGCTCAAAGAAAATTTAAGAAGAAAACTTAATAAGATCTTCAGCCCAAGAAAGAA

Network for GWHGAAZE025802

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.22	PP2C	200	469	5.50E-66

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14497	PP2C	MAPK signaling pathway - plant	map04016
K14497	PP2C	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0043169	molecular_function	cation binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.259
	SRR3591706	second leaf	48.226
	SRR3591707	mature leaf	62.468
	SRR3591708	Shoot apex	30.284
	SRR3591709	Stem	46.146
	SRR3591710	White floral bud	56.801
	SRR3591711	White flower	124.530
	SRR3591712	Green floral bud	35.782
	SRR3591713	Yellow flower	102.056
SRP173429	SRR8316895	Juvenile bud stage	22.777
	SRR8316896	Juvenile bud stage	21.722
	SRR8316897	Juvenile bud stage	11.666
	SRR8316894	Third green stage	9.694
	SRR8316900	Third green stage	23.965
	SRR8316901	Third green stage	27.344
	SRR8316898	Complete white stage	36.273
	SRR8316899	Complete white stage	68.772
	SRR8316903	Complete white stage	50.672
	SRR8316902	Silver flowering stage	69.968
	SRR8316904	Silver flowering stage	76.267
	SRR8316905	Silver flowering stage	41.348
	SRR8316906	Gold flowering stage	106.510
	SRR8316907	Gold flowering stage	75.752
	SRR8316908	Gold flowering stage	110.402
SRP132670	SRR6706286	Control	25.869
	SRR6706287	Light intensity 50%	27.232
	SRR6706288	Light intensity 20%	28.967
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.709
	CNS0095593	Slightly white alabastrum(diploid) 2	22.367
	CNS0095594	Slightly white alabastrum(diploid) 3	24.038
	CNS0095595	Whole white alabastrum(diploid) 2	22.225
	CNS0095596	Whole white alabastrum(diploid) 3	19.005
	CNS0095597	Whole white alabastrum(diploid) 4	23.100
	CNS0095598	Silvery flower (diploied) 1	58.305
	CNS0095599	Silvery flower (diploied) 2	55.635
	CNS0095600	Silvery flower (diploied) 3	119.042
	CNS0095601	Golden flower (diploid) 1	58.463
	CNS0095602	Golden flower (diploid) 2	100.370
	CNS0095603	Golden flower (diploid) 3	92.012
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.581
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.823
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.317
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.529
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.392
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.590
	CNS0095610	Silvery flower (tetraploid) 1	154.929
	CNS0095611	Silvery flower (tetraploid) 2	139.891
	CNS0095612	Silvery flower (tetraploid) 3	47.807
	CNS0095613	Golden flower (tetraploid) 1	98.138
	CNS0095614	Golden flower (tetraploid) 2	139.402
	CNS0095615	Golden flower (tetraploid) 3	125.480
CRA001975	CRR073297	Stem 1	29.054
	CRR073298	Stem 2	26.902
	CRR073299	Stem 3	23.201
	CRR073300	Leaf 1	28.221
	CRR073301	Leaf 2	34.126
	CRR073302	Leaf 3	19.707
	CRR073303	Juvenile bud 1	22.568
	CRR073304	Juvenile bud 2	20.483
	CRR073305	Juvenile bud 3	18.647
	CRR073306	Third green 1	22.046
	CRR073307	Third green 2	17.854
	CRR073308	Third green 3	18.576
	CRR073309	Second white 1	11.488
	CRR073310	Second white 2	22.801
	CRR073311	Second white 3	13.475
	CRR073312	Silver flowering 1	23.179
	CRR073313	Silver flowering 2	26.927
	CRR073314	Silver flowering 3	53.505
	CRR073315	Gold flowering 1	18.064
	CRR073316	Gold flowering 2	25.063
	CRR073317	Gold flowering 3	10.239
	CRR073318	Tawny withering 1	25.404
	CRR073319	Tawny withering 2	27.150
	CRR073320	Tawny withering 3	26.446