Gene detail

Detail information of GWHGAAZE025811

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010261970.1	PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Nelumbo nucifera]
Swissprot	tr\|Q9FNA9\|PDAT1_ARATH	Phospholipid:diacylglycerol acyltransferase 1
trEMBL	tr\|A0A061GKD4\|A0A061GKD4_THECC	Phospholipid:diacylglycerol acyltransferase isoform 1 {ECO:0000313\|EMBL:EOY30320.1}
TAIR10	AT5G13640.1	phospholipid:diacylglycerol acyltransferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	68234957	68244631	-
GWHAAZE00000007	mRNA	68234957	68244631	-
GWHAAZE00000007	exon	68234957	68235434	-
GWHAAZE00000007	exon	68236442	68236701	-
GWHAAZE00000007	exon	68239692	68240001	-
GWHAAZE00000007	exon	68241947	68242230	-
GWHAAZE00000007	exon	68242828	68243050	-
GWHAAZE00000007	exon	68244176	68244631	-
GWHAAZE00000007	five_prime_UTR	68244412	68244631	-
GWHAAZE00000007	CDS	68244176	68244411	-
GWHAAZE00000007	CDS	68242828	68243050	-
GWHAAZE00000007	CDS	68241947	68242230	-
GWHAAZE00000007	CDS	68239692	68240001	-
GWHAAZE00000007	CDS	68236442	68236701	-
GWHAAZE00000007	CDS	68234957	68235434	-

Transcript Sequence
>GWHTAAZE025845 CAAAAAAGCTTCAAATTCAGAGTCTCAATCTCAAACCGACGAGAACAGAGAGAAAGAGAAGAAGAGTAATAATAAGAAGGATGACGATGAATTTGATGTTGTTGATGTGAACAACAATAAGGATAATAGGAAGAAGAAGTTGAGGAGAAAATGGTCATGTATTGATAGTTGTTGTTGGTTGATAGGTTTCATATGTTCGATTTGGTGGTTTTTTCTATTTATGTACAATGCAATGCCGGCTTCGTTCCCTCAGTACGTTACGGAAGCGATCACGGGGCCTTTGCCGGATCCCCCGGGGGTTAAATGTAATAAGGAAGGGTTAACGGCGAAGCATCCGGTGGTTTTTGTCCCCGGAATCGTCACCGGAGGGCTTGAGTTGTGGGAAGGGCATCAATGTGCTGATGGATTGTTTAGGAAGAGACTTTGGGGTGGTACTTTTGGTGAAGTCTATAAAAGACCCTTATGCTGGGTGGAACACATGTCACTGGATAATGAAACTGGATTGGATCCCTCTGGTATAAGGATCAGGCCTGTATCTGGACTAGTAGCAGCTGATTACTTTGCTGCTGGTTATTTTGTATGGGCAGTTTTAATTGCAAACTTGGCTCGCATTGGATATGAGGAGAAAAACATGTATATGGCTGCATACGATTGGAGGATTTCATTTCAAAATACTGAGGTACGGGACCAAACTCTGAGCAGAATAAAAAGTAATATAGAACTCATGGTAACTACGAGTGGGGGAAAAAAGGTGGTTGTAATTCCGCATTCAATGGGTGCTCTGTACTTCTTGCACTTCATGAAATGGGTTGAGGCAGCTGCTCCAATGGGTGGTGGAGGTGGATCAAATTGGTGCGATAAGCATATAAAGGCTGTTATGAATATAGGCGGACCATTTTTGGGTGTTCCAAAAGCTGTCTCGGGATTATTCTCAGCTGAAGCCAAGGACATAGCTGTTGCCAGGGCTATTGCACCAGGTGTCCTGGATATGGACATGTTTGGATTTCAAACTTTACAACATGTGATGAGGATGACTCGTACTTGGGATGCGACAATGTCAATGATACCAAAAGGCGGAGACACTATCTGGGGGGGGCTTGATTGGTCTCCAGAAGAAGATTATGACTGTTGCTTAAAGAAGCTGAAGATCAATGATACTCAGACCCCACACAGCAATGGCAATGGAAAACATGTTAACTATGGAAGAATGGTATCTTTTGGAAAGGATATGACTGAGGCACATTCGTCAGTAATCGAGAGGGTGGATTTCAGGGATGCCGTTAAGGGCAATAACCTTGCAAACAACACCTGCCGGGATGTGTGGACTGAGTACCATGAGATGGGAATTGGGGGTATAAAAGCTGTTGCAGATTATAAAGTCTATACTGCCAGATCAATTTTGGATCTTCTTAATTTTGTTGCCCCAAAGATGATGAAGCGTGGTGGTGCTCATTTTTCGTATGGAATTGCTGACAATTTGGACGACAAAGAATACAAACACTACAAATATTGGTCAAATCCCTTGGAAACAAAGTTACCAAATGCTCCTTCAATGGAAATATTTTCTATGTATGGAGTTGGAATACCCACCGAAAGAGCATATGTCTACAAGTTTAGTTCCTCTGCTGAGTGCAACATCCCTTTCCAGATAGATACCTCAGCCGAGAGTGAGGATACATGTTTAAAAGGCGGGGTTTTTACTGTTGATGGAGATGAAACCGTACCCGTTCTTAGTGCAGGTTTTATGTGTGCAAAAGGCTGGAGGGGCAAAACCCGGTTCAACCCTTCGGGTATCCGTACTTACATAAGAGAATACAATCATGCCCCTCCAGCTACCCTACTGGAGGGTAGGGGGACCCAGAGTGGGGCCCATGTTGACATTATGGGGAATTTTGCCCTAATTGAAGATATTATTAGAGTAGCAGCAGGGGCCACCGGAGAAGACTTGGGAGGTGATCGAGTTTACTCTGATATCTTTAAATGGTCTGAAAAGATCAACTTGCAACTGTAG

Network for GWHGAAZE025811

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02450.16	LCAT	64	556	1.50E-66

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00679	E2.3.1.158	Metabolic pathways	map01100
K00679	E2.3.1.158	Glycerolipid metabolism	map00561

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0008374	molecular_function	O-acyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.318
	SRR3591706	second leaf	7.095
	SRR3591707	mature leaf	8.626
	SRR3591708	Shoot apex	5.498
	SRR3591709	Stem	6.196
	SRR3591710	White floral bud	6.570
	SRR3591711	White flower	8.447
	SRR3591712	Green floral bud	10.305
	SRR3591713	Yellow flower	8.506
SRP173429	SRR8316895	Juvenile bud stage	5.709
	SRR8316896	Juvenile bud stage	7.938
	SRR8316897	Juvenile bud stage	3.992
	SRR8316894	Third green stage	3.977
	SRR8316900	Third green stage	13.028
	SRR8316901	Third green stage	9.849
	SRR8316898	Complete white stage	2.366
	SRR8316899	Complete white stage	13.351
	SRR8316903	Complete white stage	6.108
	SRR8316902	Silver flowering stage	2.771
	SRR8316904	Silver flowering stage	3.517
	SRR8316905	Silver flowering stage	1.447
	SRR8316906	Gold flowering stage	6.289
	SRR8316907	Gold flowering stage	5.195
	SRR8316908	Gold flowering stage	9.659
SRP132670	SRR6706286	Control	16.017
	SRR6706287	Light intensity 50%	15.705
	SRR6706288	Light intensity 20%	16.519
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.693
	CNS0095593	Slightly white alabastrum(diploid) 2	5.724
	CNS0095594	Slightly white alabastrum(diploid) 3	6.246
	CNS0095595	Whole white alabastrum(diploid) 2	4.867
	CNS0095596	Whole white alabastrum(diploid) 3	5.241
	CNS0095597	Whole white alabastrum(diploid) 4	5.932
	CNS0095598	Silvery flower (diploied) 1	5.450
	CNS0095599	Silvery flower (diploied) 2	4.303
	CNS0095600	Silvery flower (diploied) 3	6.030
	CNS0095601	Golden flower (diploid) 1	3.441
	CNS0095602	Golden flower (diploid) 2	6.143
	CNS0095603	Golden flower (diploid) 3	5.299
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.092
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.455
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.321
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.880
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.671
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.125
	CNS0095610	Silvery flower (tetraploid) 1	6.038
	CNS0095611	Silvery flower (tetraploid) 2	5.160
	CNS0095612	Silvery flower (tetraploid) 3	4.264
	CNS0095613	Golden flower (tetraploid) 1	2.319
	CNS0095614	Golden flower (tetraploid) 2	6.353
	CNS0095615	Golden flower (tetraploid) 3	2.682
CRA001975	CRR073297	Stem 1	5.941
	CRR073298	Stem 2	5.265
	CRR073299	Stem 3	3.675
	CRR073300	Leaf 1	8.482
	CRR073301	Leaf 2	7.018
	CRR073302	Leaf 3	5.650
	CRR073303	Juvenile bud 1	5.967
	CRR073304	Juvenile bud 2	5.011
	CRR073305	Juvenile bud 3	7.667
	CRR073306	Third green 1	0.727
	CRR073307	Third green 2	1.054
	CRR073308	Third green 3	1.420
	CRR073309	Second white 1	0.266
	CRR073310	Second white 2	1.376
	CRR073311	Second white 3	1.385
	CRR073312	Silver flowering 1	0.929
	CRR073313	Silver flowering 2	1.147
	CRR073314	Silver flowering 3	1.149
	CRR073315	Gold flowering 1	2.717
	CRR073316	Gold flowering 2	6.093
	CRR073317	Gold flowering 3	4.005
	CRR073318	Tawny withering 1	5.020
	CRR073319	Tawny withering 2	2.783
	CRR073320	Tawny withering 3	3.196