Gene detail

Detail information of GWHGAAZE025815

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN80030.1	1.5401E-112	hypothetical protein VITISV_007913 [Vitis vinifera]
Swissprot	tr\|Q701F9\|VPS2A_ARATH	1E-109	Vacuolar protein sorting-associated protein 2 homolog 1
trEMBL	tr\|A5AFU2\|A5AFU2_VITVI	6E-113	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN80030.1}
TAIR10	AT2G06530.1	9E-88	SNF7 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	68299228	68303122	+
GWHAAZE00000007	mRNA	68299228	68303122	+
GWHAAZE00000007	exon	68299228	68299392	+
GWHAAZE00000007	exon	68300532	68300636	+
GWHAAZE00000007	exon	68301859	68302218	+
GWHAAZE00000007	exon	68302881	68302999	+
GWHAAZE00000007	exon	68303119	68303122	+
GWHAAZE00000007	CDS	68299228	68299392	+
GWHAAZE00000007	CDS	68300532	68300636	+
GWHAAZE00000007	CDS	68301859	68302218	+
GWHAAZE00000007	CDS	68302881	68302999	+
GWHAAZE00000007	CDS	68303119	68303122	+

Transcript Sequence
>GWHTAAZE025849 ATGAAACTGACAAAGATTCGTTTGTGGTTTTCAGAACTCCTGCGGGAAAACAAGAGGATGCTTGATAAGTCTATCAGGGAAATAGAAAGAGAGAGACAAGGTCTTCAATCACAAGAGAAGAAACTTATAGTAGAGATAAAGAAGAGTGCAAAGCAAGGGCAGATGGGAGCGGTTAAGGTGATGGCGAAAGACCTTATAAGAACCCGGCATCAGATTGAAAAATTTTATAAGCTTAAATCTCAACTCCAGGGTGTATCCCTTAGAATTCAGACTTTGAAATCGTCCCAAGCTATGGGGGAGGCAATGAAAGGTGTGACGAAGGCTATGGGTCAGATGAATAGGCAGATGAACTTACCTTCATTGCAAAAGATAATGCAAGAGTTTGAGAGGCAGAATGAGAAAATGGAAATGACATCTGAGGTAATGGGAGATGCCATTGACGATGCTTTGGAAGGGGACGAGGAAGAGGAAGAAACAGAGGAGCTTGTAAGCCAGGTCCTTGACGAGATTGGTATCGATATGAATTCGGAGGTATTTTTACCACTCTTATCTAATTGTTCCTCTGTCAACATGAGTTGCGTATACATCAGCTTGCTTCAACATGAAACTAGAAGGGAAATACCTACTCATCTTTTAAATGCGCCATCCACCTCAGTAGCTGCTCCGGCTGCAAAGAGTAAGGTTCCACAAGCTGAAGCAACAACAGGAACTAATGATGATGGTGGGATAGACAGCGACTTACAGGCCAGTTGA

Network for GWHGAAZE025815

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03357.22	Snf7	16	176	1.50E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12191	CHMP2A	Endocytosis	map04144
K12191	CHMP2A	Necroptosis	map04217

Gene Ontology

GO term	Ontology	Name
GO:0007034	biological_process	vacuolar transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.161
	SRR3591706	second leaf	19.866
	SRR3591707	mature leaf	22.783
	SRR3591708	Shoot apex	23.396
	SRR3591709	Stem	50.910
	SRR3591710	White floral bud	38.159
	SRR3591711	White flower	58.027
	SRR3591712	Green floral bud	29.139
	SRR3591713	Yellow flower	52.126
SRP173429	SRR8316895	Juvenile bud stage	28.277
	SRR8316896	Juvenile bud stage	41.410
	SRR8316897	Juvenile bud stage	20.786
	SRR8316894	Third green stage	10.432
	SRR8316900	Third green stage	26.439
	SRR8316901	Third green stage	36.049
	SRR8316898	Complete white stage	19.794
	SRR8316899	Complete white stage	56.360
	SRR8316903	Complete white stage	27.895
	SRR8316902	Silver flowering stage	21.727
	SRR8316904	Silver flowering stage	26.605
	SRR8316905	Silver flowering stage	14.030
	SRR8316906	Gold flowering stage	48.127
	SRR8316907	Gold flowering stage	46.546
	SRR8316908	Gold flowering stage	52.219
SRP132670	SRR6706286	Control	27.962
	SRR6706287	Light intensity 50%	25.883
	SRR6706288	Light intensity 20%	25.919
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.710
	CNS0095593	Slightly white alabastrum(diploid) 2	56.593
	CNS0095594	Slightly white alabastrum(diploid) 3	45.411
	CNS0095595	Whole white alabastrum(diploid) 2	36.245
	CNS0095596	Whole white alabastrum(diploid) 3	27.742
	CNS0095597	Whole white alabastrum(diploid) 4	33.517
	CNS0095598	Silvery flower (diploied) 1	44.231
	CNS0095599	Silvery flower (diploied) 2	45.453
	CNS0095600	Silvery flower (diploied) 3	33.242
	CNS0095601	Golden flower (diploid) 1	47.137
	CNS0095602	Golden flower (diploid) 2	29.358
	CNS0095603	Golden flower (diploid) 3	31.445
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.824
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.009
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.674
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.702
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.711
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.416
	CNS0095610	Silvery flower (tetraploid) 1	43.073
	CNS0095611	Silvery flower (tetraploid) 2	25.146
	CNS0095612	Silvery flower (tetraploid) 3	24.841
	CNS0095613	Golden flower (tetraploid) 1	35.212
	CNS0095614	Golden flower (tetraploid) 2	33.549
	CNS0095615	Golden flower (tetraploid) 3	25.433
CRA001975	CRR073297	Stem 1	29.115
	CRR073298	Stem 2	28.777
	CRR073299	Stem 3	19.867
	CRR073300	Leaf 1	27.612
	CRR073301	Leaf 2	26.479
	CRR073302	Leaf 3	20.399
	CRR073303	Juvenile bud 1	21.068
	CRR073304	Juvenile bud 2	18.150
	CRR073305	Juvenile bud 3	15.773
	CRR073306	Third green 1	23.303
	CRR073307	Third green 2	25.967
	CRR073308	Third green 3	18.610
	CRR073309	Second white 1	11.091
	CRR073310	Second white 2	17.359
	CRR073311	Second white 3	12.037
	CRR073312	Silver flowering 1	11.888
	CRR073313	Silver flowering 2	6.429
	CRR073314	Silver flowering 3	12.772
	CRR073315	Gold flowering 1	17.632
	CRR073316	Gold flowering 2	27.056
	CRR073317	Gold flowering 3	6.260
	CRR073318	Tawny withering 1	50.724
	CRR073319	Tawny withering 2	59.170
	CRR073320	Tawny withering 3	47.836