Gene detail

Detail information of GWHGAAZE025818

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003638273.1	1.165E-147	40S ribosomal protein S3 [Medicago truncatula]
COG	YP_183949.1	3E-31	30S ribosomal protein S3
Swissprot	tr\|Q9FJA6\|RS33_ARATH	2E-139	40S ribosomal protein S3-3
trEMBL	tr\|G8A1S3\|G8A1S3_MEDTR	4E-148	40S ribosomal protein S3 {ECO:0000313\|EMBL:AES85411.1}
TAIR10	AT5G35530.1	2E-110	Ribosomal protein S3 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	68349690	68352628	+
GWHAAZE00000007	mRNA	68349690	68352628	+
GWHAAZE00000007	exon	68349690	68349719	+
GWHAAZE00000007	exon	68349857	68349974	+
GWHAAZE00000007	exon	68350447	68350618	+
GWHAAZE00000007	exon	68351529	68351583	+
GWHAAZE00000007	exon	68351680	68351811	+
GWHAAZE00000007	exon	68352446	68352628	+
GWHAAZE00000007	CDS	68349690	68349719	+
GWHAAZE00000007	CDS	68349857	68349974	+
GWHAAZE00000007	CDS	68350447	68350618	+
GWHAAZE00000007	CDS	68351529	68351583	+
GWHAAZE00000007	CDS	68351680	68351811	+
GWHAAZE00000007	CDS	68352446	68352628	+

Transcript Sequence
>GWHTAAZE025852 ATGTCTGGACAGATTAGCAAAAAGCGAAAGCTGAATGAGGTGTTGACGAGAGAGTTAGCTGAGGATGGATACTCTGGTGTTGAGGTTAGGGTTACTCCCATGCGCACTGAGATCATCATTAGAGCTACTCGTACTCAGAATGTTCTAGGTGAGAAAGGAAGGAGAATTAGGGAGCTGACATCTGTTGTACAGAAAAGGTTTAAGTTTCCTGAGAACAGCGTGGAGTTGTACGCTGAGAAGGTCAACAATAGGGGGCTTTGTGCTATTGCTCAGGCCGAGTCTCTCCGCTACAAGCTTCTCGGTGGCCTTGCTGTTAGGAGGGCTTGCTATGGTGTTTTGAGATTCATCATGGAGAGTGGTGCAAAGGGATGCGAGGTTATCGTTAGTGGAAAGCTGAGGGCACAGCGTGCCAAATCCATGAAGTTCAAAGACGGATACATGATTTCTTCTGGACAGCCAGTCAAGGAATATATTGATGGGGCTGTTAGACACGTTCTTCTGAGACAGGGTGTCCTTGGTATCAAGGTTAAGATCATGCTCGACTGGGATCCTAAAGGAAAGCAGGGCCCAACAACTCCTCTGCCTGATCTGGTGACAATCCATACTCCCAAGGAGGAAGAGGAATACATGAGGCCAGCGTTGGTGCCACCAGTGGATATTGAGGCCTCTGTCCCAGTTGCTGTAGTTTAA

Network for GWHGAAZE025818

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07650.18	KH_2	10	83	1.30E-12
PF00189.21	Ribosomal_S3_C	96	178	1.10E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02985	RP-S3e, RPS3	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0015935	cellular_component	small ribosomal subunit
GO:0003735	molecular_function	structural constituent of ribosome
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	535.066
	SRR3591706	second leaf	246.476
	SRR3591707	mature leaf	116.944
	SRR3591708	Shoot apex	605.454
	SRR3591709	Stem	233.739
	SRR3591710	White floral bud	315.458
	SRR3591711	White flower	319.198
	SRR3591712	Green floral bud	450.795
	SRR3591713	Yellow flower	236.048
SRP173429	SRR8316895	Juvenile bud stage	209.534
	SRR8316896	Juvenile bud stage	309.563
	SRR8316897	Juvenile bud stage	155.580
	SRR8316894	Third green stage	121.072
	SRR8316900	Third green stage	402.251
	SRR8316901	Third green stage	380.778
	SRR8316898	Complete white stage	98.082
	SRR8316899	Complete white stage	335.426
	SRR8316903	Complete white stage	144.400
	SRR8316902	Silver flowering stage	101.603
	SRR8316904	Silver flowering stage	101.355
	SRR8316905	Silver flowering stage	56.587
	SRR8316906	Gold flowering stage	186.851
	SRR8316907	Gold flowering stage	210.387
	SRR8316908	Gold flowering stage	257.769
SRP132670	SRR6706286	Control	427.331
	SRR6706287	Light intensity 50%	473.840
	SRR6706288	Light intensity 20%	485.382
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	288.859
	CNS0095593	Slightly white alabastrum(diploid) 2	333.792
	CNS0095594	Slightly white alabastrum(diploid) 3	265.476
	CNS0095595	Whole white alabastrum(diploid) 2	243.229
	CNS0095596	Whole white alabastrum(diploid) 3	264.770
	CNS0095597	Whole white alabastrum(diploid) 4	182.441
	CNS0095598	Silvery flower (diploied) 1	145.738
	CNS0095599	Silvery flower (diploied) 2	152.115
	CNS0095600	Silvery flower (diploied) 3	142.803
	CNS0095601	Golden flower (diploid) 1	118.322
	CNS0095602	Golden flower (diploid) 2	122.593
	CNS0095603	Golden flower (diploid) 3	118.454
	CNS0095604	Slightly white alabastrum(tetraploid) 1	282.827
	CNS0095605	Slightly white alabastrum(tetraploid) 2	275.462
	CNS0095606	Slightly white alabastrum(tetraploid) 3	355.253
	CNS0095607	Whole white alabastrum(tetraploid) 1	158.157
	CNS0095608	Whole white alabastrum(tetraploid) 2	133.338
	CNS0095609	Whole white alabastrum(tetraploid) 3	283.200
	CNS0095610	Silvery flower (tetraploid) 1	170.962
	CNS0095611	Silvery flower (tetraploid) 2	140.367
	CNS0095612	Silvery flower (tetraploid) 3	139.109
	CNS0095613	Golden flower (tetraploid) 1	117.326
	CNS0095614	Golden flower (tetraploid) 2	124.924
	CNS0095615	Golden flower (tetraploid) 3	127.533
CRA001975	CRR073297	Stem 1	338.712
	CRR073298	Stem 2	337.890
	CRR073299	Stem 3	400.817
	CRR073300	Leaf 1	315.480
	CRR073301	Leaf 2	350.593
	CRR073302	Leaf 3	454.408
	CRR073303	Juvenile bud 1	328.075
	CRR073304	Juvenile bud 2	295.470
	CRR073305	Juvenile bud 3	273.754
	CRR073306	Third green 1	128.541
	CRR073307	Third green 2	135.298
	CRR073308	Third green 3	129.270
	CRR073309	Second white 1	131.088
	CRR073310	Second white 2	94.782
	CRR073311	Second white 3	94.921
	CRR073312	Silver flowering 1	124.078
	CRR073313	Silver flowering 2	147.197
	CRR073314	Silver flowering 3	96.954
	CRR073315	Gold flowering 1	188.404
	CRR073316	Gold flowering 2	183.802
	CRR073317	Gold flowering 3	173.947
	CRR073318	Tawny withering 1	314.445
	CRR073319	Tawny withering 2	279.543
	CRR073320	Tawny withering 3	340.312