Detail information of GWHGAAZE025820


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003638273.16.7231E-16040S ribosomal protein S3 [Medicago truncatula]
COGYP_007714070.14E-34SSU ribosomal protein S3e (S3p)
Swissprottr|Q9FJA6|RS33_ARATH1E-14940S ribosomal protein S3-3
trEMBLtr|G8A1S3|G8A1S3_MEDTR3E-16040S ribosomal protein S3 {ECO:0000313|EMBL:AES85411.1}
TAIR10AT5G35530.12E-118Ribosomal protein S3 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6840596268409570-
GWHAAZE00000007mRNA6840596268409570-
GWHAAZE00000007exon6840596268406144-
GWHAAZE00000007exon6840672968406860-
GWHAAZE00000007exon6840695368407007-
GWHAAZE00000007exon6840872268408893-
GWHAAZE00000007exon6840929268409439-
GWHAAZE00000007exon6840954168409570-
GWHAAZE00000007CDS6840954168409570-
GWHAAZE00000007CDS6840929268409439-
GWHAAZE00000007CDS6840872268408893-
GWHAAZE00000007CDS6840695368407007-
GWHAAZE00000007CDS6840672968406860-
GWHAAZE00000007CDS6840596268406144-
Transcript Sequence

Network for GWHGAAZE025820

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07650.18KH_220931.10E-12
PF00189.21Ribosomal_S3_C1061881.20E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02985RP-S3e, RPS3 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
GO:0003723molecular_functionRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf422.244
SRR3591706second leaf244.760
SRR3591707mature leaf152.592
SRR3591708Shoot apex495.376
SRR3591709Stem251.698
SRR3591710White floral bud313.754
SRR3591711White flower477.022
SRR3591712Green floral bud388.620
SRR3591713Yellow flower392.818
SRP173429 SRR8316895Juvenile bud stage 229.517
SRR8316896Juvenile bud stage 331.869
SRR8316897Juvenile bud stage 158.801
SRR8316894Third green stage 134.142
SRR8316900Third green stage 447.250
SRR8316901Third green stage 426.489
SRR8316898Complete white stage 146.620
SRR8316899Complete white stage 480.462
SRR8316903Complete white stage 192.915
SRR8316902Silver flowering stage171.859
SRR8316904Silver flowering stage172.519
SRR8316905Silver flowering stage94.688
SRR8316906Gold flowering stage 287.115
SRR8316907Gold flowering stage 317.482
SRR8316908Gold flowering stage 387.491
SRP132670SRR6706286Control353.231
SRR6706287Light intensity 50%368.768
SRR6706288Light intensity 20%390.672
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1375.676
CNS0095593Slightly white alabastrum(diploid) 2434.490
CNS0095594Slightly white alabastrum(diploid) 3348.112
CNS0095595Whole white alabastrum(diploid) 2307.943
CNS0095596Whole white alabastrum(diploid) 3335.583
CNS0095597Whole white alabastrum(diploid) 4237.603
CNS0095598Silvery flower (diploied) 1272.961
CNS0095599Silvery flower (diploied) 2231.650
CNS0095600Silvery flower (diploied) 3285.801
CNS0095601Golden flower (diploid) 1197.294
CNS0095602Golden flower (diploid) 2244.927
CNS0095603Golden flower (diploid) 3246.371
CNS0095604Slightly white alabastrum(tetraploid) 1340.822
CNS0095605Slightly white alabastrum(tetraploid) 2329.673
CNS0095606Slightly white alabastrum(tetraploid) 3492.478
CNS0095607Whole white alabastrum(tetraploid) 1181.685
CNS0095608Whole white alabastrum(tetraploid) 2175.749
CNS0095609Whole white alabastrum(tetraploid) 3394.793
CNS0095610Silvery flower (tetraploid) 1350.525
CNS0095611Silvery flower (tetraploid) 2297.466
CNS0095612Silvery flower (tetraploid) 3213.941
CNS0095613Golden flower (tetraploid) 1223.776
CNS0095614Golden flower (tetraploid) 2302.951
CNS0095615Golden flower (tetraploid) 3186.083
CRA001975CRR073297Stem 1441.803
CRR073298Stem 2434.538
CRR073299Stem 3491.519
CRR073300Leaf 1425.807
CRR073301Leaf 2472.471
CRR073302Leaf 3597.233
CRR073303Juvenile bud 1520.005
CRR073304Juvenile bud 2410.338
CRR073305Juvenile bud 3539.106
CRR073306Third green 1189.026
CRR073307Third green 2215.301
CRR073308Third green 3205.042
CRR073309Second white 1239.979
CRR073310Second white 2185.113
CRR073311Second white 3168.876
CRR073312Silver flowering 1202.376
CRR073313Silver flowering 2225.126
CRR073314Silver flowering 3184.405
CRR073315Gold flowering 1203.743
CRR073316Gold flowering 2201.923
CRR073317Gold flowering 3201.261
CRR073318Tawny withering 1406.372
CRR073319Tawny withering 2359.015
CRR073320Tawny withering 3409.304