Gene detail

Detail information of GWHGAAZE025824

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001267953.1	7.44421E-95	uncharacterized protein LOC100264512 [Vitis vinifera]
Swissprot	tr\|Q9FJA2\|TT2_ARATH	9E-63	Transcription factor TT2
trEMBL	tr\|F6HGP6\|F6HGP6_VITVI	5E-97	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51411.1}
TAIR10	AT5G35550.1	1E-48	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	68491591	68493328	+
GWHAAZE00000007	mRNA	68491591	68493328	+
GWHAAZE00000007	exon	68491591	68491731	+
GWHAAZE00000007	exon	68492225	68492354	+
GWHAAZE00000007	exon	68492767	68493328	+
GWHAAZE00000007	five_prime_UTR	68491591	68491598	+
GWHAAZE00000007	CDS	68491599	68491731	+
GWHAAZE00000007	CDS	68492225	68492354	+
GWHAAZE00000007	CDS	68492767	68493328	+

Transcript Sequence
>GWHTAAZE025858 TTAAGTCAATGGGAAGAAGACCATGTTGTGCAAAGGAGGGAGTAAATAGAGGGGCATGGACTGCCAGAGAAGATTCAATCCTAACTAATTATGTAAACCTGCATGGAGAAGGCAAATGGAGAGACCTTCCTCAAAAAGCTGGTTTAAATCGTTGTGGGAAGAGTTGCAGACTGCGATGGTTAAATTATCTTAGGCCGGATATAAAGAGAGGTAACATTTCAGCTGAAGAAGAAGAGCTCATTATCAGGCTACATGGTCTCCTTGGAAACAGATGGTCGCTCATTGCCGGAAGGTTACCAGGACGAACAGACAACGAAATAAAAAATTACTGGAATACCAGTTTGAGCAAGAGAACACAAGTTCCAAAGACCCAAAAGTTAACCAAAAAACAAAAGAAAGCGGAAGAAGAGGAAACTATAGCGGAACCACACCTGGTGATCCGAACTAAAGCCACAAAATGCACTAAAGTTGTTATCCCTAGAAAATTAAACGACGAGACGGTCGAAAAAACCGAACCTTGTTCAATAAAATGGGACCACAAGAGCCCGACTTCATCCTCGGCCTCACCGGAGGACGACTCTCGTAATTTTTTCATGGATTTCGACATTAACGACGTTTTATTATCGGATTTGGGTGACATGAAATTTAATCAAGAAAAAGAAAATAGGGGACATGATAATGACTTTTCCCCCCCTTCCATTGAAGACTTGCTGAACAATACAAGTTGTGATGAATCAATGTTTTTGGAGGATTGGGAAGCCATGAATGCAGTTGCATCCTTTCTAGGTTCAGAGGATGAGTGGTTAAATGTTGGAAATGAACAAATTTTATGA

Network for GWHGAAZE025824

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	3.80E-14
PF00249.32	Myb_DNA-binding	67	110	6.60E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.879
	SRR3591706	second leaf	0.897
	SRR3591707	mature leaf	0.120
	SRR3591708	Shoot apex	0.758
	SRR3591709	Stem	0.571
	SRR3591710	White floral bud	1.078
	SRR3591711	White flower	0.801
	SRR3591712	Green floral bud	0.145
	SRR3591713	Yellow flower	0.189
SRP173429	SRR8316895	Juvenile bud stage	0.050
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.027
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.036
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.084
	SRR8316904	Silver flowering stage	0.061
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.031
	SRR6706287	Light intensity 50%	0.031
	SRR6706288	Light intensity 20%	0.049
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.361
	CNS0095595	Whole white alabastrum(diploid) 2	0.076
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.081
	CNS0095598	Silvery flower (diploied) 1	0.002
	CNS0095599	Silvery flower (diploied) 2	0.082
	CNS0095600	Silvery flower (diploied) 3	0.271
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.095
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.038
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.710
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.156
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.091
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.132
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.054
	CNS0095610	Silvery flower (tetraploid) 1	0.952
	CNS0095611	Silvery flower (tetraploid) 2	0.400
	CNS0095612	Silvery flower (tetraploid) 3	0.099
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.128
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.514
	CRR073298	Stem 2	0.528
	CRR073299	Stem 3	0.522
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.168
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.095
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.025
	CRR073319	Tawny withering 2	0.201
	CRR073320	Tawny withering 3	0.000