Gene detail

Detail information of GWHGAAZE025858

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGH32870.1	0	auxin response factor 5 [Camellia sinensis]
Swissprot	tr\|Q8RYC8\|ARFS_ARATH	0	Auxin response factor 19
trEMBL	tr\|M4QSM6\|M4QSM6_CAMSI	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT1G19220.1	3E-158	auxin response factor 19

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	68968012	68974882	-
GWHAAZE00000007	mRNA	68968012	68974882	-
GWHAAZE00000007	exon	68974757	68974882	-
GWHAAZE00000007	exon	68974576	68974660	-
GWHAAZE00000007	exon	68973354	68973444	-
GWHAAZE00000007	exon	68973102	68973266	-
GWHAAZE00000007	exon	68972823	68973018	-
GWHAAZE00000007	exon	68971954	68972107	-
GWHAAZE00000007	exon	68970192	68970516	-
GWHAAZE00000007	exon	68968871	68970071	-
GWHAAZE00000007	exon	68968294	68968484	-
GWHAAZE00000007	exon	68968012	68968192	-
GWHAAZE00000007	CDS	68974757	68974882	-
GWHAAZE00000007	CDS	68974576	68974660	-
GWHAAZE00000007	CDS	68973354	68973444	-
GWHAAZE00000007	CDS	68973102	68973266	-
GWHAAZE00000007	CDS	68972823	68973018	-
GWHAAZE00000007	CDS	68971954	68972107	-
GWHAAZE00000007	CDS	68970192	68970516	-
GWHAAZE00000007	CDS	68968871	68970071	-
GWHAAZE00000007	CDS	68968294	68968484	-
GWHAAZE00000007	CDS	68968012	68968192	-

Transcript Sequence
>GWHTAAZE025892 ATGGGACTCAAGCAAAACAGGCAACCCTCTGAGTTCTTCTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTACCTCGTAGAGCGGCTGAAAAGATCTTTCCACCTCTAGATTTTTCAATGCAACCCCCCGCTCAAGAGATTGTAGCTAGAGATTTGCACGACCAGGCATGGACATTCAGACATATTTATAGAGGCCAACCAAAGAGGCACCTTCTGACTACGGGTTGGAGCGTCTTTGTTAGCTCTAAAAGACTTTTTGCTGGCGATGCCGTCCTATTTATTCGAGATGAAAAATCACAGCTTCTCTTGGGTATAAGACGTGCTAATAGACAGCAGCCCGCCCTCTCCTCATCGGTTATATCTAGTGACAGCATGCACATTGGAATTCTTGCTGCAGCGGCTCACGCTGCCTCCAATAGCAGCCCATTTACCATATTTTACAATCCAAGGGCCAGCCCTTCTGAGTTTGTGGTTCCTTTAGCCAAGTATAATAAAGCAATGTATGCTCAAGTTTCGGTAGGCATGCGGTTCAGAATGATGTTCGAGACCGAAGAGTCAGGGGTACGCAGATACATGGGAACAGTCACAGGTGTCAGTGATCTGGATCATGTAAGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACTGCTGGACAACGACCCAGCCGAGTTTCTGTTTGGGATATTGAGCCTGTTGTGACTCCTTTCTACATATGTCCACCTCCATTCTTCAGGCCTAAGTTTTCTAAACAACCGGGGTTGCCAGGTAGGCCAAATTTACATGATGAATTTGACATGGAGAGCGGTTTTAGGAGAGGCATCCCCTGGCTTGATGACTTGGGCATGAAAGATGCCTCAAGCTCGATTCTCCCTGGCTTGAGTTTAGTCCAGTGGATGAGCATGCAACAACAAAATAACCGTTCTGCATTGATCCCTCCCATTGGCACTGATGATCCGTCTAAGCTGTTGAGCTTTCAATTCGGCAAAACAAGTCAACAGGTTGCTCAACTCCAGCAGCAGTCTCTAGCGTGGCCCCAACAGCAACAGCTGCAGCAACTTTTGCAGTCTTCTCTCAATCCACAGCAGCAACCCCCCCAGCAGCCCCCTGGAAATAGTGTAGTTAACCCCAACCAAATTGCAAATCAAAATTCGCTGCAACCAGTTACATACTCTCAGTTTCCACAGCAGCAGCTGCTAACAGGGAACACGCATTCCCAGCAGAACACCCACCTAGCTAACAGGAATTCATTTCAGAGGACATCCTTGCCTCAAGATTTGCAGGTTCAACAACAAATCGAACAACAAACTAGCCTCTTGCAGAGGCCGCAGCAGCAGCAAACAAACTTGCAACAGAACCCACACCCACTACAGTTGCTGCAACAGAACTTGTCGCAGAGGCCACAAGGGCAACACCCCTCACTGCAGAATATCTCAGAGCATCAGCTACAACTACAGCTGCTGCAGAAGTTGCAGCAGCAGCAACTGCTCTCCCCAGTGAGCCCTCGTGTGGAGCCTCAGCTGCAGGCCGTTCAACAAAACCGGCATTCTCAGCAGCAACATAGCAGCAACAGCTTCTCAACATCAACTACTTTTATGCAATCACCACAGTTTCCTGCGAACCAAGCCATGGGCCAGCAGAAACCATTGATGGGAATTAGAGCCCATTCTGGCATTACTGATGGAGATGGTCCTTCATGTTCAACCTCGCCTTCGACAAATAATTGCCATGTAGCCCCCTCAAAATTTTTGAACAAGAACCAACAAGGTCAAGCTGTATTACTGGAAGAACCGCTGGTTGATCCTTCAATTAATAGTGTTCAAGAGCTTCAGAGCAAATCTGACATACGAAACACACATGAATTTTCTTGCTCTAAAGGGCCAGAGCAACCAAAATACAAAGGCATTGCTACTGACCCATTGGAAGCCTCCTCGTCTGCAACATCATACTGCTTGGATGCTGGTGGTGGCCTTCAACAGAATTTTTCTCTCCCTGGCTTCTGTTTGGATGGGGATGTTCAGTCACAAACAAGGAACAATCTTTCCTTTGGAGCTAATATTGATAGTTTGACACCTGATGCTCTGTTGTCAAGGGGTTTTGATTCTCAAAACATGCTCTCTAACTATGGTGGCACTCCAAGAGATATTGAGACAGAGTTGTCCACAGCTGCAATTAGTTCTCAGTCATTTGGAGTGCCAGATATGTCGTTCAAGCCGGGGTGTCCGAATGATGTTGTCATCAACGAGGCCGGGGTTCTGAATAATGGGCTCTGGGGAAACCAGACTCAGCGTGTGAGAACATACACAAAGGTTCAAAAACGCGGCTCAGTGGGAAGAACAATTGATGTTACTCGTTATAAAGGGTATGAGGAGCTTAGAAATGATCTGGCTCGCATGTTTGGGATTGAAGGGCAACTGGAAGACACGCAAAGAACAGAGTGGAAACTCGTCTATGTAGATCATGAGAACGACATACTTCTTGTTGGTGATGACCCATGGGAGGAGTTTGTGAGTTGTGTTCAGAGCATAAAGATACTGTCATCAGCAGAGGTACAGCAGATGAGTTTGGACGGAGATTTAGGTCAAGTGCCCATCCCCAATCAAGCTTCCAGCGGCACAGACAGCGGCAATGCATGGAGGGGCCACTATGATGACAACTCAGCTGCCTCGTTCAATCGATGA

Network for GWHGAAZE025858

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	13	114	4.60E-20
PF06507.14	Auxin_resp	139	221	3.70E-36
PF02309.17	AUX_IAA	774	863	2.40E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	59.073
	SRR3591706	second leaf	30.785
	SRR3591707	mature leaf	45.313
	SRR3591708	Shoot apex	32.141
	SRR3591709	Stem	46.203
	SRR3591710	White floral bud	28.539
	SRR3591711	White flower	28.463
	SRR3591712	Green floral bud	28.271
	SRR3591713	Yellow flower	20.343
SRP173429	SRR8316895	Juvenile bud stage	10.199
	SRR8316896	Juvenile bud stage	14.368
	SRR8316897	Juvenile bud stage	5.957
	SRR8316894	Third green stage	8.224
	SRR8316900	Third green stage	17.260
	SRR8316901	Third green stage	19.958
	SRR8316898	Complete white stage	4.485
	SRR8316899	Complete white stage	27.160
	SRR8316903	Complete white stage	15.258
	SRR8316902	Silver flowering stage	9.957
	SRR8316904	Silver flowering stage	16.244
	SRR8316905	Silver flowering stage	6.764
	SRR8316906	Gold flowering stage	20.525
	SRR8316907	Gold flowering stage	22.810
	SRR8316908	Gold flowering stage	25.901
SRP132670	SRR6706286	Control	29.918
	SRR6706287	Light intensity 50%	27.683
	SRR6706288	Light intensity 20%	26.724
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.055
	CNS0095593	Slightly white alabastrum(diploid) 2	11.070
	CNS0095594	Slightly white alabastrum(diploid) 3	10.269
	CNS0095595	Whole white alabastrum(diploid) 2	13.292
	CNS0095596	Whole white alabastrum(diploid) 3	10.433
	CNS0095597	Whole white alabastrum(diploid) 4	10.413
	CNS0095598	Silvery flower (diploied) 1	29.859
	CNS0095599	Silvery flower (diploied) 2	17.219
	CNS0095600	Silvery flower (diploied) 3	25.976
	CNS0095601	Golden flower (diploid) 1	26.130
	CNS0095602	Golden flower (diploid) 2	32.465
	CNS0095603	Golden flower (diploid) 3	32.239
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.187
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.075
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.987
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.490
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.418
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.685
	CNS0095610	Silvery flower (tetraploid) 1	24.975
	CNS0095611	Silvery flower (tetraploid) 2	28.303
	CNS0095612	Silvery flower (tetraploid) 3	16.756
	CNS0095613	Golden flower (tetraploid) 1	16.185
	CNS0095614	Golden flower (tetraploid) 2	22.169
	CNS0095615	Golden flower (tetraploid) 3	23.300
CRA001975	CRR073297	Stem 1	35.417
	CRR073298	Stem 2	36.430
	CRR073299	Stem 3	25.478
	CRR073300	Leaf 1	38.282
	CRR073301	Leaf 2	37.739
	CRR073302	Leaf 3	25.227
	CRR073303	Juvenile bud 1	26.737
	CRR073304	Juvenile bud 2	15.678
	CRR073305	Juvenile bud 3	41.544
	CRR073306	Third green 1	17.697
	CRR073307	Third green 2	11.187
	CRR073308	Third green 3	14.837
	CRR073309	Second white 1	17.453
	CRR073310	Second white 2	17.403
	CRR073311	Second white 3	22.458
	CRR073312	Silver flowering 1	14.454
	CRR073313	Silver flowering 2	13.860
	CRR073314	Silver flowering 3	10.278
	CRR073315	Gold flowering 1	13.320
	CRR073316	Gold flowering 2	14.927
	CRR073317	Gold flowering 3	12.624
	CRR073318	Tawny withering 1	18.922
	CRR073319	Tawny withering 2	14.329
	CRR073320	Tawny withering 3	19.123