Gene detail

Detail information of GWHGAAZE025860

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_004232855.1	PREDICTED: general transcription factor IIH subunit 4 isoform X2 [Solanum lycopersicum]
trEMBL	tr\|K4B968\|K4B968_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g078440.2.1}
TAIR10	AT4G17020.1	transcription factor-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	69006615	69016701	+
GWHAAZE00000007	mRNA	69006615	69016701	+
GWHAAZE00000007	exon	69006615	69006745	+
GWHAAZE00000007	exon	69006840	69006965	+
GWHAAZE00000007	exon	69007697	69007865	+
GWHAAZE00000007	exon	69008436	69008641	+
GWHAAZE00000007	exon	69009133	69009201	+
GWHAAZE00000007	exon	69009367	69009460	+
GWHAAZE00000007	exon	69009642	69009742	+
GWHAAZE00000007	exon	69009875	69009920	+
GWHAAZE00000007	exon	69010001	69010060	+
GWHAAZE00000007	exon	69011356	69011424	+
GWHAAZE00000007	exon	69011617	69011700	+
GWHAAZE00000007	exon	69011813	69011896	+
GWHAAZE00000007	exon	69013703	69013788	+
GWHAAZE00000007	exon	69014577	69014671	+
GWHAAZE00000007	exon	69014780	69014817	+
GWHAAZE00000007	exon	69015544	69015624	+
GWHAAZE00000007	exon	69016389	69016463	+
GWHAAZE00000007	exon	69016564	69016701	+
GWHAAZE00000007	CDS	69006615	69006745	+
GWHAAZE00000007	CDS	69006840	69006965	+
GWHAAZE00000007	CDS	69007697	69007865	+
GWHAAZE00000007	CDS	69008436	69008641	+
GWHAAZE00000007	CDS	69009133	69009201	+
GWHAAZE00000007	CDS	69009367	69009460	+
GWHAAZE00000007	CDS	69009642	69009742	+
GWHAAZE00000007	CDS	69009875	69009920	+
GWHAAZE00000007	CDS	69010001	69010060	+
GWHAAZE00000007	CDS	69011356	69011424	+
GWHAAZE00000007	CDS	69011617	69011700	+
GWHAAZE00000007	CDS	69011813	69011896	+
GWHAAZE00000007	CDS	69013703	69013788	+
GWHAAZE00000007	CDS	69014577	69014671	+
GWHAAZE00000007	CDS	69014780	69014817	+
GWHAAZE00000007	CDS	69015544	69015624	+
GWHAAZE00000007	CDS	69016389	69016463	+
GWHAAZE00000007	CDS	69016564	69016701	+

Transcript Sequence
>GWHTAAZE025894 CTGCAACCTAAGTCGGTCCCCACAGTTCAGCGGCATACTAGTGTCATAAACTTAAACACGCTCGGTTGTCTTTCCAGGATCAAAGTCATTTCATGCTTGGGAATTCTTAATCGTGTACTGAGATCTCTACAGGAGGTGTATCTTCAAAATCTGCCACCTCTCTGCCGCCTTGATCTCGTAGTCTCAGTTGCAGGCCGCCCCTGCTCTCCAACTTGTCTCAACTGTTTAGGCTTATTGGAGTCAAAGAAACAGCCAAGTCATCAAATTTTCGGTCTTTGGAACCTTGCCAAAATGCCGCAAGTGAGGATCATCGCGAAGAATTTCATGGACATGGTGGCCTCATTGCCTGTCATGAAGCTTGACAAACTATACGAGAATCCCTTCATCTGTGAAGCTATTCTTAGGTTCTCTCTCTCTCTCTCTTATAAAGTATTTGTCTTCATTTTGTTGTCTGTGGTGCTCAGATCTTTGCCACCTTTAGCCAAGAAGTATGTGTTGCAGATGTTGTACATTGATGTACCCGTAACAGCCAAATCAATGGAAGAGTGGGTTCTTGCTGATGGGCTCTCAAAGCACAGAGTAGCCATTGATAAATTAATTCAATTGAGAGTGTTTACTGAAATTGTCGACAGGAAAAAAGAAACAACTTACAAAGTAAATCCAATGTTTCAGATGAACCTCCAGAAGCATATAGTGTATGGTGGAGTTTTGCCAAGAGAACCCATGCCTACAAACATAACTGTGAGGCTTCCTAGCTTGGAGGATCTAGATGTCTATGCTGCTCAACAATGGGAGTCTTTCTTGCTGCACCTTATAAGTTCCAGTGAAGCTGAAACAACAAAAAGCATCAGCTCCTCTATGATGAAAGTTTTCCAGCAAGGCCTATTGAGTCAAAGGGACAAAGAAGCTCCAAGGTTGACTGAGAGTGGTTTCCAGTTCTTGCTGATGGATACAAATGCACAACTGTGGTACATTGTTAGGGAGTATATCACTAATTCTGAGGAGCTAGGTGTGGATTCATCAGATCTTATCTCATTTCTTTTGGAGCTCAGCTTTCATGTTACTGGCGAGGCGTATAACATGAACACACTGACTGATATTCAGCGGAGTACAATCAAGGACCTTGCAGACTTGGGATTGGTCAAGCTGCAGCAGGGTAGGAAAGAGAGTTGGTTCATTCCTACTAAATTATCTACCAATCTCTCAATTAGCCTGTCAGATACATCATCAAGGAAAGTGGGATATGTTGTTGTGGAAACAAACTTCCGGATGTATGCGTACTCAACCTCTAAACTACATTGTGAGATTTTACGCCTCTTCTCAAGAGTAGAATATCAGCTTCCGAACCTCATCGTTGCATCAATTACAAAAGAAAACCTGTATAAGGCTTTTCAAAATGGAATATCAGCAGATCAGGCAAGTGCATGTGCATTGCACGTGATCATGATGTCTAATACTATAATTTCATTTCTTCAGCAGAATGCACACCCTCGAGTAGCAGAGAAAGTACCGTCTGTACCGGAAAATGTCACTGACCAGATTAGGTTGTGGGAATCAGATATGAATAGGGTTGAGATGACACCTGCACATTTCTACGACGAGTTCCCATCTAGGGATGTCTTCGAGGCAGCTTGTGATTATGCACGAGAATATGGCGGTTTGTTGTGGGAGGATTCAAAAAGGATGCGTCTTGTCGTGAAGGCCGAAATTTTCGCACACATGAAAGAATTTCTTCGTAGTCAGAAACAGTAA

Network for GWHGAAZE025860

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03849.15	Tfb2	152	497	1.30E-90
PF18307.2	Tfb2_C	512	579	6.70E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03144	TFIIH4, GTF2H4, TFB2	Basal transcription factors	map03022
K03144	TFIIH4, GTF2H4, TFB2	Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name
GO:0006289	biological_process	nucleotide-excision repair
GO:0000439	cellular_component	transcription factor TFIIH core complex
GO:0001671	molecular_function	ATPase activator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.261
	SRR3591706	second leaf	14.786
	SRR3591707	mature leaf	14.454
	SRR3591708	Shoot apex	21.919
	SRR3591709	Stem	24.500
	SRR3591710	White floral bud	18.677
	SRR3591711	White flower	20.194
	SRR3591712	Green floral bud	22.844
	SRR3591713	Yellow flower	15.993
SRP173429	SRR8316895	Juvenile bud stage	15.582
	SRR8316896	Juvenile bud stage	23.780
	SRR8316897	Juvenile bud stage	9.206
	SRR8316894	Third green stage	8.578
	SRR8316900	Third green stage	18.766
	SRR8316901	Third green stage	21.661
	SRR8316898	Complete white stage	6.500
	SRR8316899	Complete white stage	28.965
	SRR8316903	Complete white stage	13.109
	SRR8316902	Silver flowering stage	5.147
	SRR8316904	Silver flowering stage	7.965
	SRR8316905	Silver flowering stage	3.537
	SRR8316906	Gold flowering stage	12.356
	SRR8316907	Gold flowering stage	11.293
	SRR8316908	Gold flowering stage	11.062
SRP132670	SRR6706286	Control	10.730
	SRR6706287	Light intensity 50%	12.981
	SRR6706288	Light intensity 20%	15.557
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.780
	CNS0095593	Slightly white alabastrum(diploid) 2	10.944
	CNS0095594	Slightly white alabastrum(diploid) 3	11.354
	CNS0095595	Whole white alabastrum(diploid) 2	9.294
	CNS0095596	Whole white alabastrum(diploid) 3	8.409
	CNS0095597	Whole white alabastrum(diploid) 4	8.319
	CNS0095598	Silvery flower (diploied) 1	16.205
	CNS0095599	Silvery flower (diploied) 2	12.550
	CNS0095600	Silvery flower (diploied) 3	9.505
	CNS0095601	Golden flower (diploid) 1	12.810
	CNS0095602	Golden flower (diploid) 2	11.872
	CNS0095603	Golden flower (diploid) 3	10.543
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.264
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.590
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.883
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.994
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.574
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.272
	CNS0095610	Silvery flower (tetraploid) 1	13.064
	CNS0095611	Silvery flower (tetraploid) 2	13.940
	CNS0095612	Silvery flower (tetraploid) 3	6.995
	CNS0095613	Golden flower (tetraploid) 1	6.855
	CNS0095614	Golden flower (tetraploid) 2	11.666
	CNS0095615	Golden flower (tetraploid) 3	4.558
CRA001975	CRR073297	Stem 1	12.559
	CRR073298	Stem 2	11.368
	CRR073299	Stem 3	7.594
	CRR073300	Leaf 1	13.480
	CRR073301	Leaf 2	14.223
	CRR073302	Leaf 3	8.489
	CRR073303	Juvenile bud 1	8.738
	CRR073304	Juvenile bud 2	5.734
	CRR073305	Juvenile bud 3	11.024
	CRR073306	Third green 1	0.557
	CRR073307	Third green 2	1.186
	CRR073308	Third green 3	1.347
	CRR073309	Second white 1	1.681
	CRR073310	Second white 2	1.850
	CRR073311	Second white 3	1.690
	CRR073312	Silver flowering 1	0.903
	CRR073313	Silver flowering 2	1.340
	CRR073314	Silver flowering 3	1.024
	CRR073315	Gold flowering 1	4.365
	CRR073316	Gold flowering 2	7.952
	CRR073317	Gold flowering 3	4.183
	CRR073318	Tawny withering 1	8.633
	CRR073319	Tawny withering 2	8.639
	CRR073320	Tawny withering 3	8.229