Gene detail

Detail information of GWHGAAZE025861

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP03046.1	0	unnamed protein product [Coffea canephora]
COG	YP_004652153.1	2E-164	3-oxoacyl-ACP synthase
Swissprot	tr\|Q9C9P4\|KASC2_ARATH	0	3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic (Precursor)
trEMBL	tr\|A0A068U3G0\|A0A068U3G0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313\|EMBL:CDP03046.1}
TAIR10	AT1G74960.3	0	fatty acid biosynthesis 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	69035675	69039345	+
GWHAAZE00000007	mRNA	69035675	69039345	+
GWHAAZE00000007	exon	69035675	69035956	+
GWHAAZE00000007	exon	69036043	69036246	+
GWHAAZE00000007	exon	69036378	69036488	+
GWHAAZE00000007	exon	69036586	69036681	+
GWHAAZE00000007	exon	69036984	69037029	+
GWHAAZE00000007	exon	69037123	69037202	+
GWHAAZE00000007	exon	69037348	69037416	+
GWHAAZE00000007	exon	69037548	69037632	+
GWHAAZE00000007	exon	69037769	69037923	+
GWHAAZE00000007	exon	69038018	69038098	+
GWHAAZE00000007	exon	69038693	69038752	+
GWHAAZE00000007	exon	69039229	69039345	+
GWHAAZE00000007	CDS	69035675	69035956	+
GWHAAZE00000007	CDS	69036043	69036246	+
GWHAAZE00000007	CDS	69036378	69036488	+
GWHAAZE00000007	CDS	69036586	69036681	+
GWHAAZE00000007	CDS	69036984	69037029	+
GWHAAZE00000007	CDS	69037123	69037202	+
GWHAAZE00000007	CDS	69037348	69037416	+
GWHAAZE00000007	CDS	69037548	69037632	+
GWHAAZE00000007	CDS	69037769	69037923	+
GWHAAZE00000007	CDS	69038018	69038098	+
GWHAAZE00000007	CDS	69038693	69038752	+
GWHAAZE00000007	CDS	69039229	69039345	+

Transcript Sequence
>GWHTAAZE025895 ATGAATTTGTCATCCTTTAGGCAATGGTTAAGTCTGCTAAATAGGTATTTATGCTCTCTAATTGATCTAAATATTTCAGGGGAAGCAATGGTTGTAGCTGTGCAACCTTCAGAAGTGGCAGCAAAGATGAAACCTCCAACCAAACAAAGGAGAGTGGTTGTAACAGGGATGGGTGTGGAGACCCCAATTGGTCATGATCCCCATGTGTTTTATGACAATCTTCTAGAAGGTGTCAGTGGCATAAGTGAGATAGAAGCTTTTGATTGTTCCAATTTTCCAACTAGAATTGCTGGAGAGATCAAGTCTTTCTCGACAGATGGATGGGTTGCTCCGAAACTTTCCAGGAGGATGGACCGATTCATGTTGTACATGCTGACAGCTGGCAAGAAGGCATTGGCTGATGGTGGAATTACACAAGATGTAATGGATGAAATAAATAAAGCTAGATGTGGAATTTTGATTGGCTCCGCTATGGGCGGCATGAAGGTTTTCAATGATGCGATAGAAGCTTTAAGGATCTCATACAAGAAGATGAATCCTTTTTGTGTACCTTTTGCAACTACAAATATGGGCTCTGCCATGCTCTCCATTGATCTGGGATGGATGGGCCCAAACTATTCAATTTCTACTGCTTGTGCCACAAGCAATTTCTGTATATTAAATGCAGCGAACCACATCCTCAGAAACGAAACTGACATGATGCTTTGTGGTGGCTCAGATGCAGTAATCATACCTATAGGATTGGGAGGTTTTGTGGCATGCAGAGCTCTTTCTCAGAGAAATAATGATCCTACCAAAGCCTCGCGCCCTTGGGATATTAGTCGTGATGGATTTGTTATGGGAGAAGGAGCTGGAGTTTTGCTTCTGGAAGAACTTGAGCATGCTAAGAAAAGAGGTGCAAGGATTTATGCTGAATTTCTTGGCGGAAGTTTCACTTCTGATGCTTATCACATGACAGAGCCTCATCCTGACGGGGCTGGTGTAATTCTCTGCATAGAGAAGGCTTTAGCTCAGTCAGGGGTATCGAGGGAAGATGTGAACTACATAAACGCACATGCTACTTCCACACCAGCTGGAGATCTTAAGGAGTACCATGCCCTCCTTCATTGTTTCGGCCAGAATGAAGAGTTACGAGTGAACTCTACAAAATCTATGATTGGTCACTTACTAGGTGCAGCTGGTGCTGTGGAAGCTGTCGCAACTGTGAAGGCAATACATACGGGGTGGGTTCATCCAAATATCAATCTTGAAAACCCAGATGAAGGCGTGGACCCATGCGTGCTGGTGGGGCCAAAGAAAGAGAGACTTGACATTAAGGTAGCGTTGTCTAATTCTTTCGGGTTCGGTGGCCACAACTCCTCAATCTTATTTGCACCTTACAAGTAG

Network for GWHGAAZE025861

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00109.27	ketoacyl-synt	50	295	1.30E-58
PF02801.23	Ketoacyl-synt_C	303	417	1.40E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09458	fabF, OXSM, CEM1	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biotin metabolism	map00780

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.858
	SRR3591706	second leaf	28.266
	SRR3591707	mature leaf	26.865
	SRR3591708	Shoot apex	27.864
	SRR3591709	Stem	38.503
	SRR3591710	White floral bud	64.104
	SRR3591711	White flower	72.356
	SRR3591712	Green floral bud	57.031
	SRR3591713	Yellow flower	87.054
SRP173429	SRR8316895	Juvenile bud stage	32.794
	SRR8316896	Juvenile bud stage	48.869
	SRR8316897	Juvenile bud stage	20.432
	SRR8316894	Third green stage	19.396
	SRR8316900	Third green stage	69.137
	SRR8316901	Third green stage	64.483
	SRR8316898	Complete white stage	42.139
	SRR8316899	Complete white stage	96.565
	SRR8316903	Complete white stage	51.190
	SRR8316902	Silver flowering stage	42.763
	SRR8316904	Silver flowering stage	54.156
	SRR8316905	Silver flowering stage	29.634
	SRR8316906	Gold flowering stage	89.112
	SRR8316907	Gold flowering stage	93.092
	SRR8316908	Gold flowering stage	104.792
SRP132670	SRR6706286	Control	53.280
	SRR6706287	Light intensity 50%	57.923
	SRR6706288	Light intensity 20%	64.491
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.233
	CNS0095593	Slightly white alabastrum(diploid) 2	32.958
	CNS0095594	Slightly white alabastrum(diploid) 3	33.566
	CNS0095595	Whole white alabastrum(diploid) 2	33.998
	CNS0095596	Whole white alabastrum(diploid) 3	39.370
	CNS0095597	Whole white alabastrum(diploid) 4	35.478
	CNS0095598	Silvery flower (diploied) 1	28.376
	CNS0095599	Silvery flower (diploied) 2	29.668
	CNS0095600	Silvery flower (diploied) 3	77.829
	CNS0095601	Golden flower (diploid) 1	29.384
	CNS0095602	Golden flower (diploid) 2	64.093
	CNS0095603	Golden flower (diploid) 3	61.197
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.298
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.912
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.617
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.082
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.794
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.341
	CNS0095610	Silvery flower (tetraploid) 1	64.588
	CNS0095611	Silvery flower (tetraploid) 2	56.252
	CNS0095612	Silvery flower (tetraploid) 3	50.493
	CNS0095613	Golden flower (tetraploid) 1	41.843
	CNS0095614	Golden flower (tetraploid) 2	57.967
	CNS0095615	Golden flower (tetraploid) 3	60.442
CRA001975	CRR073297	Stem 1	48.026
	CRR073298	Stem 2	39.872
	CRR073299	Stem 3	36.881
	CRR073300	Leaf 1	59.547
	CRR073301	Leaf 2	55.578
	CRR073302	Leaf 3	54.504
	CRR073303	Juvenile bud 1	65.092
	CRR073304	Juvenile bud 2	73.072
	CRR073305	Juvenile bud 3	55.532
	CRR073306	Third green 1	47.145
	CRR073307	Third green 2	40.370
	CRR073308	Third green 3	39.082
	CRR073309	Second white 1	34.983
	CRR073310	Second white 2	37.295
	CRR073311	Second white 3	27.851
	CRR073312	Silver flowering 1	28.174
	CRR073313	Silver flowering 2	18.827
	CRR073314	Silver flowering 3	29.763
	CRR073315	Gold flowering 1	22.500
	CRR073316	Gold flowering 2	30.598
	CRR073317	Gold flowering 3	14.540
	CRR073318	Tawny withering 1	29.001
	CRR073319	Tawny withering 2	19.546
	CRR073320	Tawny withering 3	24.427