Gene detail

Detail information of GWHGAAZE025864

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP14668.1	unnamed protein product [Coffea canephora]
COG	YP_685547.1	leucyl-tRNA synthetase
trEMBL	tr\|A0A068V487\|A0A068V487_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_90 {ECO:0000313\|EMBL:CDP14668.1}
TAIR10	AT1G09620.1	ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	69116311	69119565	+
GWHAAZE00000007	mRNA	69116311	69119565	+
GWHAAZE00000007	exon	69116311	69119565	+
GWHAAZE00000007	CDS	69116311	69119565	+

Transcript Sequence
>GWHTAAZE025898 ATGGCATCAAACACCGAGAGTGGAAGGAGCTTTGCTAGGAGAGACTTACTTTTGGAACATGAGTCTAAAGTTCAGAAATTGTGGGAAGAGAATGACGTTTTCAGGGCTGATGCTAAAGAGGAACTTCCAAAACCCGGTGAAAAGTTCTTCGGCAACTTTCCGTTTCCCTATATGAATGGCTATCTTCACTTGGGTCACGCGTTCTCTATTTCCAAGCTTGAGTTTGCTGCTGCTTATCACAGATTGAGGGGTGCTAATGTCCTATTGCCTTTTGCTTTCCACTGTACCGGGATGCCAATCAAGGCATCGGCTGATAAACTTTCAAGGGAGATCCAGAAATTTGGCAACCCTCCCGTATTCCCAGATGTAACAGAGGAGAAAGCTAGTGAACCCGAACCGAAACCTAGCGAGGGGAACGAAGATATGCCAGATAAATTTAAGGGTAAGAAGTCTAAGGCAGTTTCCAAGGCTGGTGGAGATAAGTACCAGTGGGAGATAATGCAGAGTTATGGCCTTTCTGATGAAGAGATATCCAAGTTCCAGGATCCATATTATTGGTCGACCTACTTTCCCCCTCTAGCTGTAGAGGATCTGAAGGCTTTTGGATTGGGTTGTGATTGGAGGCGCACATTTATCACAACTGATATGAACCCGTTTTTTGATTCATTCGTTAGGTGGCAGATGAGGAAATTGAAAGCAATGGGTAAAATTGTCAAAGACTTGAGGTACACTATATACTCCCCCTTAGATGGACAGCCTTGTGCAGATCATGACCGAGCTTCGGGCGAAGGTGTTATTCCACAGGAGTACACACTCATAAAAATGGAGGTGGTCCCACCTTTTCCTCTGAAGTTGAGCGTTCTTGAAGGCAAGAAAGTTTATCTTGCAGCTGCAACATTGAGGCCGGAGACCATGTATGGCCAAACCAACTCATGGGTATTGCCGGATGGAAAATATGGGGCATTTGAAGTGAACGAAACAGACGTTTTCATCTTAACCGAGAGGTCAGCTCTTAATCTGGCGTACCAGAGATTGTCTCGTGTCCCAGAGAAGCCAACTTGTTTGGCTGAGCTGACTGGTTATGATCTGATCGGTTTGCCTCTAAGATCTCCTCTTGCATTTAATGAGATTATATACTCTCTTCCAATGCTGTCAGTTCTCACAGACAAGGGTACCGGTATTGTTACTAGTGTTCCCAGTGATTCTCCTGATGATTTTATGGCACTGCACGACTTGAAAGCAAAGCCGGCTTTCAGGGCCAAGTTTGGTGTAAAGGATGAGTGGGTCTTACCGTTTGAGGTCATCCCAATAATCAGCACCCCAGAATATGGAGACAAATCCGCAGAGAAAATTTGCACGGATATGAAAATCAAGAGCCAGAATGAGAGAGAGAAGCTTGATGCAGCCAAGAAAATAATCTACAAAGGAGGATTCTACGAGGGTACTATGCTTGTTGGGGAATATACCGGAATGAGAGTCCAAGAAGCCAAGAGTTCAATCAAGAGCAAGCTTTTAGAGATGGGTGAAGCCGTAATTTACAGCGAACCGGAGAAGAAGGTCAGGTCGAGATCTGGGGACGAGTGTGTTGTGGCATTGACCGATCAGTGGTATATCACATACGGGGAAACGGAGTGGAGGAAGACCGCAGAGGAATGCCTGGCCATTATGAATCTATACTCTGATGAGACTCGACACGGCTTTGAGCACACATTGAGTTGGCTTAATCAATGGGCGTGTTCGCGTAATTTTGGCCTCGGTACTCGTATTCCTTGGGATGAGCAGTTTCTTGTGGAATCTTTGTCCGATTCAACACTTTACATGGCGTATTATACTGTATGTCATTTTTTCCAGAGAGGTGAGATGTATGGATCAGATACCTCTTTGCTTAAACCTGAGCAGTTGACAGATGAAGTCTGGGATTTCTTATTTTGTGATGGCCCATACCCCAAATCATCAGATCTATCTTCGTCCCTTCTTAATAAGATGAAACAAGAGTTTGAATATTGGTACCCTTTTGATCTCCGAGTTTCTGGTAAGGATCTCATGCAAAATCATCTTACATTTTGCATCTATAACCATGCAGCACTTATGCCCAAACACCATTGGCCTCGAGGATTCAGATGCAATGGCCACATAATGCTGAATTCCGAGAAAATGTCCAAGTCCACGGGTAATTTTAGGACGTTACGTCAAGCAATTGAGGAGTTTTCAGCTGATGCCACAAGATTCTCTCTTGCTGATGCTGGGGATGGAATGGACGATGCCAATTTCGTTTTTGAAACTGCTAATGCTGCAATTTTACGGCTTACTAAGGAGATATCATGGATGCAAGAGGTTCTTGCTGCCGAGTCGTCATTAAGAGTCGGTCCACCTTCTACATATGCTGACCGTGTATTTGCAAATGAGATTAATATTGCAGTCAAAATGACAGAAAAGAACTACAATGAGTACATGTTTCGAGAAGCTTTGAAAACTGGGTTCTATGATCTTCAGGCTGCTAGAGACGAGTATAGGTTTTCTTGTGGGTCCGTGGGTATGAATCGCGATCTACTTTGGCAGTTTATGGATGTTCAGACACGGCTTATCACTCCCGTTTGCCCGCATTACGGTGAATATGTTTGGAAGGAACTTTTGAAAAAGGATGGATTTGCCGTTAAAGCAGGATGGCCAGAAGCCGACTTGCCGGATCTTACTCTCCAGAAAGCCAACAAATATTTGCAAGACTCGATTGTGTCAATGAGGAAGCTTCTTCAGAAACAGGTTTCTGGTTCAAAGAAAGGCAAAGTCCAGGTATCAAATAATCAAAACAAGCCAATGGCCGGTCTAATATTTGTGAACGAGCAATACGATGGATGGAAAAAGGAATGTTTGAACATACTTCGAAGCAAATTTGACAGCACCACTTGTACCTTTGCACCGGACAAAGACATCCTACAAGCTTTGCAGCAGAGTGCAATTGGGCAGGAAGGGAACTTTAAGCAAACCCAAAAGCTATGCATGCCCTTCTTGAGGTTTAAGAAGGATGAGGTTATTGCTGTTGGGGTCCAGGCTTTGGATCTGAAGCTGCCATTTGGCGAAATTGAGGTTCTCACAGAGAACTTGGAGTTGATAAAGCGACAGCTGGGTCTTGAGCGAGTGGAAATTTTGTCTGCTACGGATCCGAATGCTTTTATGAGGGCTGGGCCCCATGCCTCACTGCTGAAACAGACTCCACCGTCACCAGGGAATCCTACCGCCATCTTCATGAGCGACTAA

Network for GWHGAAZE025864

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00133.23	tRNA-synt_1	24	106	5.70E-09
PF00133.23	tRNA-synt_1	195	756	1.30E-28
PF08264.14	Anticodon_1	796	935	9.00E-12

Protein Sequence

>GWHPAAZE025882
MASNTESGRSFARRDLLLEHESKVQKLWEENDVFRADAKEELPKPGEKFFGNFPFPYMNGYLHLGHAFSISKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLSREIQKFGNPPVFPDVTEEKASEPEPKPSEGNEDMPDKFKGKKSKAVSKAGGDKYQWEIMQSYGLSDEEISKFQDPYYWSTYFPPLAVEDLKAFGLGCDWRRTFITTDMNPFFDSFVRWQMRKLKAMGKIVKDLRYTIYSPLDGQPCADHDRASGEGVIPQEYTLIKMEVVPPFPLKLSVLEGKKVYLAAATLRPETMYGQTNSWVLPDGKYGAFEVNETDVFILTERSALNLAYQRLSRVPEKPTCLAELTGYDLIGLPLRSPLAFNEIIYSLPMLSVLTDKGTGIVTSVPSDSPDDFMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIISTPEYGDKSAEKICTDMKIKSQNEREKLDAAKKIIYKGGFYEGTMLVGEYTGMRVQEAKSSIKSKLLEMGEAVIYSEPEKKVRSRSGDECVVALTDQWYITYGETEWRKTAEECLAIMNLYSDETRHGFEHTLSWLNQWACSRNFGLGTRIPWDEQFLVESLSDSTLYMAYYTVCHFFQRGEMYGSDTSLLKPEQLTDEVWDFLFCDGPYPKSSDLSSSLLNKMKQEFEYWYPFDLRVSGKDLMQNHLTFCIYNHAALMPKHHWPRGFRCNGHIMLNSEKMSKSTGNFRTLRQAIEEFSADATRFSLADAGDGMDDANFVFETANAAILRLTKEISWMQEVLAAESSLRVGPPSTYADRVFANEINIAVKMTEKNYNEYMFREALKTGFYDLQAARDEYRFSCGSVGMNRDLLWQFMDVQTRLITPVCPHYGEYVWKELLKKDGFAVKAGWPEADLPDLTLQKANKYLQDSIVSMRKLLQKQVSGSKKGKVQVSNNQNKPMAGLIFVNEQYDGWKKECLNILRSKFDSTTCTFAPDKDILQALQQSAIGQEGNFKQTQKLCMPFLRFKKDEVIAVGVQALDLKLPFGEIEVLTENLELIKRQLGLERVEILSATDPNAFMRAGPHASLLKQTPPSPGNPTAIFMSD

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01869	LARS, leuS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006429	biological_process	leucyl-tRNA aminoacylation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0000166	molecular_function	nucleotide binding
GO:0004823	molecular_function	leucine-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0002161	molecular_function	aminoacyl-tRNA editing activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.481
	SRR3591706	second leaf	24.334
	SRR3591707	mature leaf	18.497
	SRR3591708	Shoot apex	33.879
	SRR3591709	Stem	27.741
	SRR3591710	White floral bud	28.687
	SRR3591711	White flower	36.432
	SRR3591712	Green floral bud	32.726
	SRR3591713	Yellow flower	31.808
SRP173429	SRR8316895	Juvenile bud stage	29.369
	SRR8316896	Juvenile bud stage	38.340
	SRR8316897	Juvenile bud stage	16.759
	SRR8316894	Third green stage	15.172
	SRR8316900	Third green stage	49.928
	SRR8316901	Third green stage	44.081
	SRR8316898	Complete white stage	10.193
	SRR8316899	Complete white stage	42.930
	SRR8316903	Complete white stage	23.968
	SRR8316902	Silver flowering stage	12.492
	SRR8316904	Silver flowering stage	18.761
	SRR8316905	Silver flowering stage	9.179
	SRR8316906	Gold flowering stage	30.512
	SRR8316907	Gold flowering stage	29.970
	SRR8316908	Gold flowering stage	29.324
SRP132670	SRR6706286	Control	44.622
	SRR6706287	Light intensity 50%	46.941
	SRR6706288	Light intensity 20%	53.444
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.518
	CNS0095593	Slightly white alabastrum(diploid) 2	20.549
	CNS0095594	Slightly white alabastrum(diploid) 3	19.544
	CNS0095595	Whole white alabastrum(diploid) 2	19.011
	CNS0095596	Whole white alabastrum(diploid) 3	22.309
	CNS0095597	Whole white alabastrum(diploid) 4	15.688
	CNS0095598	Silvery flower (diploied) 1	28.755
	CNS0095599	Silvery flower (diploied) 2	23.813
	CNS0095600	Silvery flower (diploied) 3	47.406
	CNS0095601	Golden flower (diploid) 1	25.576
	CNS0095602	Golden flower (diploid) 2	49.884
	CNS0095603	Golden flower (diploid) 3	46.399
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.719
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.618
	CNS0095606	Slightly white alabastrum(tetraploid) 3	59.316
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.447
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.081
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.934
	CNS0095610	Silvery flower (tetraploid) 1	41.905
	CNS0095611	Silvery flower (tetraploid) 2	52.601
	CNS0095612	Silvery flower (tetraploid) 3	29.963
	CNS0095613	Golden flower (tetraploid) 1	16.382
	CNS0095614	Golden flower (tetraploid) 2	36.253
	CNS0095615	Golden flower (tetraploid) 3	38.471
CRA001975	CRR073297	Stem 1	50.224
	CRR073298	Stem 2	45.343
	CRR073299	Stem 3	49.667
	CRR073300	Leaf 1	49.967
	CRR073301	Leaf 2	43.492
	CRR073302	Leaf 3	44.137
	CRR073303	Juvenile bud 1	45.486
	CRR073304	Juvenile bud 2	37.833
	CRR073305	Juvenile bud 3	64.749
	CRR073306	Third green 1	14.987
	CRR073307	Third green 2	12.124
	CRR073308	Third green 3	15.754
	CRR073309	Second white 1	18.385
	CRR073310	Second white 2	16.546
	CRR073311	Second white 3	20.521
	CRR073312	Silver flowering 1	17.500
	CRR073313	Silver flowering 2	17.030
	CRR073314	Silver flowering 3	14.784
	CRR073315	Gold flowering 1	16.949
	CRR073316	Gold flowering 2	28.823
	CRR073317	Gold flowering 3	22.940
	CRR073318	Tawny withering 1	39.413
	CRR073319	Tawny withering 2	29.621
	CRR073320	Tawny withering 3	34.083