Gene detail

Detail information of GWHGAAZE025867

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277473.1	0	PREDICTED: pectinesterase [Vitis vinifera]
COG	YP_006407803.1	4E-53	pectin methylesterase
Swissprot	tr\|P83948\|PME3_CITSI	2E-157	Pectinesterase 3 (Precursor)
trEMBL	tr\|F6HH00\|F6HH00_VITVI	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT1G53830.1	6E-125	pectin methylesterase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	69219650	69221795	-
GWHAAZE00000007	mRNA	69219650	69221795	-
GWHAAZE00000007	exon	69219650	69220368	-
GWHAAZE00000007	exon	69220688	69221795	-
GWHAAZE00000007	CDS	69220688	69221795	-
GWHAAZE00000007	CDS	69219650	69220368	-

Transcript Sequence
>GWHTAAZE025901 ATGGAGTCCTCCATATCCAACACCAACATCATCATCAAGACCTCTCTTCAACCAAGAAGTACAAAAAGCACCGTTCTTCTTCTCATCTTTATCATTATCACTCTCACAACAGCACTCTTACTCACCTCCATCCTCAAAGATACTTCATCATCATCACCACCACCACCACCACCACCATCATCAACATTATCAGACGATCCTCCATTAATACCCTCTCCACCTCAACAACCTCTACACCATCACCACCCATTCATCAAGAAAGCCTGCACCAACACTCACTACCCTTCCCTTTGCTTCTCCACTGTCTCTTCCTTCCCCGCCACCGAAGCCTCCTTCACCTTCCACCGCATTCTTGAATTCTCAATCAACCAAACCGCCAAACAAGTGGAAACCACCCGTTTCAACATCTTGCTCAACTTCTCCACCCAAGATTTAACTTCCTCTCAAAATATTGCCCTCGAAGACTGCATCGAAATGCTCGATCAGACCCTCTATGAACTCGGAGTTGCCATTGAGGACTTACGTCGAACACCTGGTGGGGCCAACCTCGAAACCCTCCTTAGTGCTGCAATGACTAACGAAAACACCTGCATCGATGGATTCGCCGAGTTGGAAGAATTATCAGACTACTTGATTGGCCAAGTGAGACTCAAAGAACAACTCCAAAGCTCCCTTTCTCCGATAGTGGGTATGATCAGCAATTGTTTGGCCATAGCCAAGTATTTTGAAACTGTAAAAATCCAAGAATCTTCCAAGAACCCTAGATTGCTATTCAGAGAGATTAAACAAGCGAATTTGCTTGATTGGATGACTATTGGGGACCGGAAGATGATGAGAAGAAAACCCATATTATTGATTCCAAATGTAAGTGTGGCTGTTGATGGAACCGGGAATTACACGACGATCAGTGAGGCTGTTAATATGGCTCCAAGGTTGAGCCTCAACAGGTATGTGATCAAGATAAAGGCAGGGTTGTACAAGGAGAATGTGGTGATTCCCAGGTACAAGTCTAACATCATGTTTGATGGAGATGGAATGAACTCAACTGTCATCACTGGCTCCAGAAATTTCATTGACGGATTCTCCACTTTCACTTCTGCTACTTTGACTGTGGTAGGTGACAAATTCTTAGCAAGGGACCTAACAATCATAAACACATCAGGTCCAGAGAAGCATCAGGCAGTTGCATTGAGAGTGACCTCAAATGCGGCCTTTTATCACTGCGAAATCATTTCTTACCAAGACACTCTCTACGCTCATTCGCTCAGCCAATTATACCGCGAATGTATGATCCAAGGCACCGTTGATTTCATATTCGGCAATGCAGCTGCCATTTTCCAGAACTGTTTGATATTAGTGAGAAAACCGATCCCTGGCCAAAAGAACATGATCACGGCTCAAGGCAGAGAGGACCCAAACCAGAACACGGGTATATCATTGCAGAATTGTACCATTATGGCTGCACCGGACTTGTCAGTGGCTGAGAGGGGAAACTTTTTGACATACTTGGGTAGGCCTTGGAGGAATTATTCGAGGACGGTGATAATGAAGAGCTATTTAGGGGACCTTATACACCCTCAAGGATGGTGCAAGTGGAACGAGCAGAGTGTGTTGGATACGGTAGAGTACATGGAGTACATGAATTTCGGACCCGGGGCAGACACGAGAGGAAGGGTAACGTGGGCGGCGAATATAAATAATTGTAGCCAAGACATTGAAAGGCAGTTCACTGTGGGACAGTTCTTACATGGGGCTGATGAGTGGTTAAAGTCCACTGTTTTTCCTCTCTTTGAATTTGGTGGTGAAGAAATAAGACATGTTGAGTGA

Network for GWHGAAZE025867

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	84	238	4.60E-25
PF01095.20	Pectinesterase	288	584	4.70E-127

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0004857	molecular_function	enzyme inhibitor activity
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.198
	SRR3591706	second leaf	0.273
	SRR3591707	mature leaf	0.072
	SRR3591708	Shoot apex	2.230
	SRR3591709	Stem	1.717
	SRR3591710	White floral bud	1.034
	SRR3591711	White flower	0.849
	SRR3591712	Green floral bud	0.498
	SRR3591713	Yellow flower	0.197
SRP173429	SRR8316895	Juvenile bud stage	1.036
	SRR8316896	Juvenile bud stage	0.836
	SRR8316897	Juvenile bud stage	0.353
	SRR8316894	Third green stage	0.430
	SRR8316900	Third green stage	1.214
	SRR8316901	Third green stage	0.888
	SRR8316898	Complete white stage	0.366
	SRR8316899	Complete white stage	0.915
	SRR8316903	Complete white stage	0.874
	SRR8316902	Silver flowering stage	0.022
	SRR8316904	Silver flowering stage	0.204
	SRR8316905	Silver flowering stage	0.167
	SRR8316906	Gold flowering stage	0.407
	SRR8316907	Gold flowering stage	0.123
	SRR8316908	Gold flowering stage	0.273
SRP132670	SRR6706286	Control	1.028
	SRR6706287	Light intensity 50%	1.036
	SRR6706288	Light intensity 20%	1.251
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.802
	CNS0095593	Slightly white alabastrum(diploid) 2	1.689
	CNS0095594	Slightly white alabastrum(diploid) 3	0.722
	CNS0095595	Whole white alabastrum(diploid) 2	1.172
	CNS0095596	Whole white alabastrum(diploid) 3	0.809
	CNS0095597	Whole white alabastrum(diploid) 4	1.172
	CNS0095598	Silvery flower (diploied) 1	0.541
	CNS0095599	Silvery flower (diploied) 2	2.205
	CNS0095600	Silvery flower (diploied) 3	0.425
	CNS0095601	Golden flower (diploid) 1	2.021
	CNS0095602	Golden flower (diploid) 2	1.566
	CNS0095603	Golden flower (diploid) 3	1.097
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.412
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.349
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.251
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.140
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.262
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.993
	CNS0095610	Silvery flower (tetraploid) 1	1.319
	CNS0095611	Silvery flower (tetraploid) 2	1.246
	CNS0095612	Silvery flower (tetraploid) 3	3.885
	CNS0095613	Golden flower (tetraploid) 1	0.756
	CNS0095614	Golden flower (tetraploid) 2	1.014
	CNS0095615	Golden flower (tetraploid) 3	0.779
CRA001975	CRR073297	Stem 1	2.451
	CRR073298	Stem 2	2.460
	CRR073299	Stem 3	3.152
	CRR073300	Leaf 1	2.329
	CRR073301	Leaf 2	2.354
	CRR073302	Leaf 3	1.086
	CRR073303	Juvenile bud 1	0.940
	CRR073304	Juvenile bud 2	2.278
	CRR073305	Juvenile bud 3	2.376
	CRR073306	Third green 1	1.503
	CRR073307	Third green 2	0.473
	CRR073308	Third green 3	0.455
	CRR073309	Second white 1	0.131
	CRR073310	Second white 2	0.074
	CRR073311	Second white 3	0.372
	CRR073312	Silver flowering 1	0.356
	CRR073313	Silver flowering 2	0.081
	CRR073314	Silver flowering 3	0.006
	CRR073315	Gold flowering 1	0.897
	CRR073316	Gold flowering 2	1.151
	CRR073317	Gold flowering 3	0.528
	CRR073318	Tawny withering 1	1.561
	CRR073319	Tawny withering 2	1.941
	CRR073320	Tawny withering 3	1.089