Detail information of GWHGAAZE025868


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrABD61653.10sucrose synthase [Cichorium intybus]
COGYP_003529337.10sucrose synthase
Swissprottr|P49035|SUS1_DAUCA0Sucrose synthase isoform 1
trEMBLtr|A3QQY2|A3QQY2_CICIN0Sucrose synthase {ECO:0000313|EMBL:ABD61653.1}
TAIR10AT3G43190.10sucrose synthase 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6923025069234136-
GWHAAZE00000007mRNA6923025069234136-
GWHAAZE00000007exon6923025069230282-
GWHAAZE00000007exon6923041169230549-
GWHAAZE00000007exon6923063769231200-
GWHAAZE00000007exon6923129469231518-
GWHAAZE00000007exon6923163069231796-
GWHAAZE00000007exon6923188669232002-
GWHAAZE00000007exon6923209369232266-
GWHAAZE00000007exon6923236269232457-
GWHAAZE00000007exon6923255469232889-
GWHAAZE00000007exon6923298669233178-
GWHAAZE00000007exon6923327469233425-
GWHAAZE00000007exon6923370669233832-
GWHAAZE00000007exon6923403969234136-
GWHAAZE00000007CDS6923403969234136-
GWHAAZE00000007CDS6923370669233832-
GWHAAZE00000007CDS6923327469233425-
GWHAAZE00000007CDS6923298669233178-
GWHAAZE00000007CDS6923255469232889-
GWHAAZE00000007CDS6923236269232457-
GWHAAZE00000007CDS6923209369232266-
GWHAAZE00000007CDS6923188669232002-
GWHAAZE00000007CDS6923163069231796-
GWHAAZE00000007CDS6923129469231518-
GWHAAZE00000007CDS6923063769231200-
GWHAAZE00000007CDS6923041169230549-
GWHAAZE00000007CDS6923025069230282-
Transcript Sequence

Network for GWHGAAZE025868

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00862.20Sucrose_synth85531.80E-277
PF00534.21Glycos_transf_15667372.10E-32
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00695E2.4.1.13 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500

Gene Ontology

GO term OntologyName
GO:0005985biological_processsucrose metabolic process
GO:0016157molecular_functionsucrose synthase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2005.845
SRR3591706second leaf396.490
SRR3591707mature leaf98.556
SRR3591708Shoot apex774.946
SRR3591709Stem1984.233
SRR3591710White floral bud773.762
SRR3591711White flower632.549
SRR3591712Green floral bud536.966
SRR3591713Yellow flower632.456
SRP173429 SRR8316895Juvenile bud stage 432.634
SRR8316896Juvenile bud stage 493.198
SRR8316897Juvenile bud stage 240.790
SRR8316894Third green stage 202.580
SRR8316900Third green stage 609.472
SRR8316901Third green stage 486.855
SRR8316898Complete white stage 230.609
SRR8316899Complete white stage 538.805
SRR8316903Complete white stage 394.910
SRR8316902Silver flowering stage220.910
SRR8316904Silver flowering stage319.866
SRR8316905Silver flowering stage164.685
SRR8316906Gold flowering stage 618.861
SRR8316907Gold flowering stage 650.816
SRR8316908Gold flowering stage 687.723
SRP132670SRR6706286Control636.659
SRR6706287Light intensity 50%672.762
SRR6706288Light intensity 20%755.339
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1195.263
CNS0095593Slightly white alabastrum(diploid) 2206.678
CNS0095594Slightly white alabastrum(diploid) 3187.024
CNS0095595Whole white alabastrum(diploid) 2186.329
CNS0095596Whole white alabastrum(diploid) 3151.064
CNS0095597Whole white alabastrum(diploid) 4161.735
CNS0095598Silvery flower (diploied) 1388.086
CNS0095599Silvery flower (diploied) 2413.382
CNS0095600Silvery flower (diploied) 3444.039
CNS0095601Golden flower (diploid) 1304.511
CNS0095602Golden flower (diploid) 2428.164
CNS0095603Golden flower (diploid) 3413.179
CNS0095604Slightly white alabastrum(tetraploid) 1332.757
CNS0095605Slightly white alabastrum(tetraploid) 2230.632
CNS0095606Slightly white alabastrum(tetraploid) 3993.624
CNS0095607Whole white alabastrum(tetraploid) 1171.806
CNS0095608Whole white alabastrum(tetraploid) 2105.950
CNS0095609Whole white alabastrum(tetraploid) 3482.304
CNS0095610Silvery flower (tetraploid) 1350.636
CNS0095611Silvery flower (tetraploid) 2454.042
CNS0095612Silvery flower (tetraploid) 3318.390
CNS0095613Golden flower (tetraploid) 1111.698
CNS0095614Golden flower (tetraploid) 2256.680
CNS0095615Golden flower (tetraploid) 3180.317
CRA001975CRR073297Stem 11072.855
CRR073298Stem 2994.749
CRR073299Stem 31062.122
CRR073300Leaf 1940.632
CRR073301Leaf 2803.238
CRR073302Leaf 3913.409
CRR073303Juvenile bud 1994.645
CRR073304Juvenile bud 2736.869
CRR073305Juvenile bud 31205.717
CRR073306Third green 1732.266
CRR073307Third green 2592.103
CRR073308Third green 3686.716
CRR073309Second white 1502.798
CRR073310Second white 2373.604
CRR073311Second white 3418.960
CRR073312Silver flowering 1527.898
CRR073313Silver flowering 2570.141
CRR073314Silver flowering 3518.894
CRR073315Gold flowering 1161.890
CRR073316Gold flowering 2155.143
CRR073317Gold flowering 3208.814
CRR073318Tawny withering 11282.868
CRR073319Tawny withering 2708.091
CRR073320Tawny withering 31625.344