Detail information of GWHGAAZE025873


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP33970.15.5097E-100hypothetical protein JCGZ_07541 [Jatropha curcas]
Swissprottr|Q9SKC3|ARI9_ARATH3E-10Probable E3 ubiquitin-protein ligase ARI9
trEMBLtr|A0A067KNU9|A0A067KNU9_JATCU2E-100Uncharacterized protein {ECO:0000313|EMBL:KDP33970.1}
TAIR10AT3G53690.12E-64RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6932768869329818+
GWHAAZE00000007mRNA6932768869329818+
GWHAAZE00000007exon6932768869328799+
GWHAAZE00000007exon6932966869329818+
GWHAAZE00000007CDS6932768869328799+
GWHAAZE00000007CDS6932966869329818+
Transcript Sequence

Network for GWHGAAZE025873

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01485.22IBR2743226.30E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.010
SRR3591706second leaf7.180
SRR3591707mature leaf5.816
SRR3591708Shoot apex12.797
SRR3591709Stem12.838
SRR3591710White floral bud8.720
SRR3591711White flower6.916
SRR3591712Green floral bud8.497
SRR3591713Yellow flower7.390
SRP173429 SRR8316895Juvenile bud stage 4.610
SRR8316896Juvenile bud stage 6.936
SRR8316897Juvenile bud stage 2.417
SRR8316894Third green stage 2.503
SRR8316900Third green stage 7.140
SRR8316901Third green stage 5.259
SRR8316898Complete white stage 1.137
SRR8316899Complete white stage 7.922
SRR8316903Complete white stage 1.654
SRR8316902Silver flowering stage1.725
SRR8316904Silver flowering stage1.938
SRR8316905Silver flowering stage0.460
SRR8316906Gold flowering stage 2.948
SRR8316907Gold flowering stage 2.643
SRR8316908Gold flowering stage 3.296
SRP132670SRR6706286Control11.205
SRR6706287Light intensity 50%9.608
SRR6706288Light intensity 20%9.245
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.337
CNS0095593Slightly white alabastrum(diploid) 24.799
CNS0095594Slightly white alabastrum(diploid) 33.180
CNS0095595Whole white alabastrum(diploid) 22.733
CNS0095596Whole white alabastrum(diploid) 32.605
CNS0095597Whole white alabastrum(diploid) 43.165
CNS0095598Silvery flower (diploied) 17.421
CNS0095599Silvery flower (diploied) 24.961
CNS0095600Silvery flower (diploied) 33.886
CNS0095601Golden flower (diploid) 15.345
CNS0095602Golden flower (diploid) 26.403
CNS0095603Golden flower (diploid) 36.305
CNS0095604Slightly white alabastrum(tetraploid) 14.224
CNS0095605Slightly white alabastrum(tetraploid) 23.525
CNS0095606Slightly white alabastrum(tetraploid) 37.948
CNS0095607Whole white alabastrum(tetraploid) 12.833
CNS0095608Whole white alabastrum(tetraploid) 22.095
CNS0095609Whole white alabastrum(tetraploid) 34.249
CNS0095610Silvery flower (tetraploid) 17.057
CNS0095611Silvery flower (tetraploid) 28.589
CNS0095612Silvery flower (tetraploid) 32.571
CNS0095613Golden flower (tetraploid) 13.625
CNS0095614Golden flower (tetraploid) 27.435
CNS0095615Golden flower (tetraploid) 32.925
CRA001975CRR073297Stem 19.754
CRR073298Stem 210.508
CRR073299Stem 35.873
CRR073300Leaf 18.534
CRR073301Leaf 28.959
CRR073302Leaf 34.212
CRR073303Juvenile bud 12.605
CRR073304Juvenile bud 21.499
CRR073305Juvenile bud 36.161
CRR073306Third green 10.049
CRR073307Third green 20.248
CRR073308Third green 30.267
CRR073309Second white 10.137
CRR073310Second white 20.103
CRR073311Second white 30.087
CRR073312Silver flowering 10.331
CRR073313Silver flowering 20.165
CRR073314Silver flowering 30.780
CRR073315Gold flowering 11.941
CRR073316Gold flowering 23.503
CRR073317Gold flowering 32.344
CRR073318Tawny withering 16.237
CRR073319Tawny withering 25.943
CRR073320Tawny withering 36.931