Gene detail

Detail information of GWHGAAZE025880

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004291015.1	0	PREDICTED: uncharacterized protein LOC101301742 [Fragaria vesca subsp. vesca]
trEMBL	tr\|A0A061GJ02\|A0A061GJ02_THECC	0	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein {ECO:0000313\|EMBL:EOY29850.1}
TAIR10	AT5G11730.1	7E-135	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	69453013	69457643	-
GWHAAZE00000007	mRNA	69453013	69457643	-
GWHAAZE00000007	exon	69457125	69457643	-
GWHAAZE00000007	exon	69453013	69453528	-
GWHAAZE00000007	CDS	69457125	69457643	-
GWHAAZE00000007	CDS	69453013	69453528	-

Transcript Sequence
>GWHTAAZE025914 ATGCAATCAAAGGCTGTTTCAATGGAGGAAGGCAAAGAGCCTGCAGTTATAAATAGGACAAACCCATCAAGGGCTTTGCCCCAAAGGCTGCTTCAATTACTTGCCCTGTTTCTTGTTTTGTGTTTTGGGTTTTCTGTGGTTAGTATATACTTGATTCGACACTCCGCGTTTCAAAGCATAATGGCAATGGAAAGGCCCAATCTACAGCCTTGTGTTGAAGAACCAAATAGTTTGCATCGTTGGACTAAGCCTCCATCCAATTTGCTCCACACCATGACTGACAAAGAGCTCCTTTGGAGAGCCTCTTTAGTTCCGAGAATAAAGAAGTATCCGTTTGAGAGAACCCCGAAGATTGCATTCATGTTCTTGACTAAGGGCCCATTGCCATTATCACCTCTTTGGGAGAGGTTTTTCAAAGGGCATGAAGGGCTTTATTCTATTTATGTTCATTCATTGCCATCATTCCGAGATAACTTCCCATCCTCATCGGTTTTCTACCAGAGACAAATTCCAAGTCAGGTGGCAGAGTGGGGTAGAATGAGCATGTGCGATGCTGAAAAAAGACTTCTCGCCAATGCATTACTGGACATATCCAACGAATGGTTCGTTCTCCTCTCCGAATCATGCATTCCCCTCTACAACTTCACCCTCATCTACCACTACATGTTCAAATCCAAATTCAGCTTCATGGGTGCCTTTGACGACCCCGGGCCTTTCGGTAGAGGCCGCTATAACGACAACATGGCACCCGAGGTGAACCTCACCCAATGGCGTAAAGGGTCCCAATGGTTCGAAGTCGACCGAAGACTTGCAATTTATATAGTCGAAGACACCACATTTTACCCAAAGTTTAACGATTTTTGTAAACCGGCTTGTTATGTTGACGAGCACTACTTCCCCACCATGCTGACGATTCGAGCCCCGAATCTTTTGGCTAACCGGAGCATCACTTGGGTTGACTGGTCAAGGGGTGGGCCCCACCCTGCTACCTTCGGAAGAGCGGATATTACAGAAGGGTTCATGAGAGAATGCTAG

Network for GWHGAAZE025880

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0033

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02485.22	Branch	118	343	1.50E-84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0008375	molecular_function	acetylglucosaminyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.605
	SRR3591706	second leaf	5.037
	SRR3591707	mature leaf	5.728
	SRR3591708	Shoot apex	5.517
	SRR3591709	Stem	8.617
	SRR3591710	White floral bud	5.483
	SRR3591711	White flower	7.241
	SRR3591712	Green floral bud	8.019
	SRR3591713	Yellow flower	6.882
SRP173429	SRR8316895	Juvenile bud stage	7.914
	SRR8316896	Juvenile bud stage	8.642
	SRR8316897	Juvenile bud stage	4.923
	SRR8316894	Third green stage	3.794
	SRR8316900	Third green stage	11.098
	SRR8316901	Third green stage	11.035
	SRR8316898	Complete white stage	4.099
	SRR8316899	Complete white stage	15.726
	SRR8316903	Complete white stage	5.698
	SRR8316902	Silver flowering stage	3.750
	SRR8316904	Silver flowering stage	5.473
	SRR8316905	Silver flowering stage	3.111
	SRR8316906	Gold flowering stage	10.368
	SRR8316907	Gold flowering stage	9.342
	SRR8316908	Gold flowering stage	11.812
SRP132670	SRR6706286	Control	13.427
	SRR6706287	Light intensity 50%	13.323
	SRR6706288	Light intensity 20%	12.239
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.498
	CNS0095593	Slightly white alabastrum(diploid) 2	4.230
	CNS0095594	Slightly white alabastrum(diploid) 3	8.060
	CNS0095595	Whole white alabastrum(diploid) 2	7.696
	CNS0095596	Whole white alabastrum(diploid) 3	5.068
	CNS0095597	Whole white alabastrum(diploid) 4	5.221
	CNS0095598	Silvery flower (diploied) 1	4.933
	CNS0095599	Silvery flower (diploied) 2	4.320
	CNS0095600	Silvery flower (diploied) 3	10.281
	CNS0095601	Golden flower (diploid) 1	4.717
	CNS0095602	Golden flower (diploid) 2	8.975
	CNS0095603	Golden flower (diploid) 3	10.207
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.499
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.944
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.053
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.014
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.714
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.339
	CNS0095610	Silvery flower (tetraploid) 1	8.561
	CNS0095611	Silvery flower (tetraploid) 2	8.458
	CNS0095612	Silvery flower (tetraploid) 3	6.082
	CNS0095613	Golden flower (tetraploid) 1	4.144
	CNS0095614	Golden flower (tetraploid) 2	5.835
	CNS0095615	Golden flower (tetraploid) 3	10.912
CRA001975	CRR073297	Stem 1	18.020
	CRR073298	Stem 2	15.951
	CRR073299	Stem 3	20.590
	CRR073300	Leaf 1	14.736
	CRR073301	Leaf 2	13.819
	CRR073302	Leaf 3	16.436
	CRR073303	Juvenile bud 1	17.515
	CRR073304	Juvenile bud 2	15.923
	CRR073305	Juvenile bud 3	22.440
	CRR073306	Third green 1	8.612
	CRR073307	Third green 2	5.616
	CRR073308	Third green 3	8.960
	CRR073309	Second white 1	5.761
	CRR073310	Second white 2	4.233
	CRR073311	Second white 3	6.026
	CRR073312	Silver flowering 1	6.275
	CRR073313	Silver flowering 2	4.517
	CRR073314	Silver flowering 3	5.501
	CRR073315	Gold flowering 1	9.380
	CRR073316	Gold flowering 2	11.277
	CRR073317	Gold flowering 3	9.211
	CRR073318	Tawny withering 1	17.343
	CRR073319	Tawny withering 2	10.432
	CRR073320	Tawny withering 3	12.687