Gene detail

Detail information of GWHGAAZE025885

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009799606.1	1.23247E-75	PREDICTED: transcription factor RAX2-like [Nicotiana sylvestris]
Swissprot	tr\|Q9SJL7\|RAX2_ARATH	3E-71	Transcription factor RAX2
trEMBL	tr\|B9HE03\|B9HE03_POPTR	2E-73	Uncharacterized protein {ECO:0000313\|EMBL:EEE93047.1}
TAIR10	AT2G36890.1	3E-58	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	69561571	69564046	-
GWHAAZE00000007	mRNA	69561571	69564046	-
GWHAAZE00000007	exon	69563867	69564046	-
GWHAAZE00000007	exon	69562863	69562992	-
GWHAAZE00000007	exon	69561571	69562015	-
GWHAAZE00000007	five_prime_UTR	69564003	69564046	-
GWHAAZE00000007	CDS	69563867	69564002	-
GWHAAZE00000007	CDS	69562863	69562992	-
GWHAAZE00000007	CDS	69561571	69562015	-

Transcript Sequence
>GWHTAAZE025919 GTCAGCTTCTCTTGGTTGTTTTTGAAGTAGGAAATTAAGCAGCCATGGGAAGAGCTCCTTGTTGTGATAAGAGTAAGGTGAAAAGGGGACCATGGTCTCCTGATGAAGATGCTACACTGAAGAACTATCTCCACAAATATGGCACTGGTGGCAATTGGATTGCTCTCCCTCACAAAGCTGGGCTAAAGCGCTGCGGAAAGAGTTGCCGCCTTCGATGGCTGAATTATCTAAGGCCAGACATCAACCATGGTGCTTTCTCTGAAGAAGAAGACAACATTATATGCTCTCTTTTTTCTCAAATGGGAAGCAGATGGTCTATCATAGCCTCAAAGTTACAAGGAAGAACAGACAATGATGTGAAGAACCATTGGAACACAAAATTGAAGAAGAAATTTATGGCAACAAAAGCAAATCCCATCAACAACAACAGCAGCCCAAGAAATTCACATCCATTTTTGGTTCCCAAATTCGAAGCTTACAATCCCGTCTTTTCGACTTTTCTAACTCAAAATGCCCCATCGACAATGTCGCTAAATGCAGTTAATTACGACAATGCGAGCATTTCCGGTTCATCTACATCACTCGCTATGGACCACAACTATGATTTATCATCATGGTCCGGACCAGATGGGTATTCGATGGATTTCAGTACGGGGTTTTTGGAAAATCTTATGGGTGGATTTGAAGGTGTTAAGGAAACCAATTCCAGTGGAGATTTGGTTAATTCTCCTTTTGCTGATGCTAAAACAGGGGTG

Network for GWHGAAZE025885

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	62	9.40E-14
PF00249.32	Myb_DNA-binding	69	111	1.80E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.380
	SRR3591706	second leaf	1.302
	SRR3591707	mature leaf	0.423
	SRR3591708	Shoot apex	4.342
	SRR3591709	Stem	7.007
	SRR3591710	White floral bud	7.330
	SRR3591711	White flower	29.601
	SRR3591712	Green floral bud	1.025
	SRR3591713	Yellow flower	16.472
SRP173429	SRR8316895	Juvenile bud stage	1.214
	SRR8316896	Juvenile bud stage	1.253
	SRR8316897	Juvenile bud stage	0.171
	SRR8316894	Third green stage	0.195
	SRR8316900	Third green stage	0.335
	SRR8316901	Third green stage	0.451
	SRR8316898	Complete white stage	0.413
	SRR8316899	Complete white stage	1.804
	SRR8316903	Complete white stage	0.587
	SRR8316902	Silver flowering stage	0.488
	SRR8316904	Silver flowering stage	1.295
	SRR8316905	Silver flowering stage	0.066
	SRR8316906	Gold flowering stage	0.472
	SRR8316907	Gold flowering stage	0.835
	SRR8316908	Gold flowering stage	2.002
SRP132670	SRR6706286	Control	1.514
	SRR6706287	Light intensity 50%	1.234
	SRR6706288	Light intensity 20%	0.762
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.150
	CNS0095593	Slightly white alabastrum(diploid) 2	1.609
	CNS0095594	Slightly white alabastrum(diploid) 3	1.596
	CNS0095595	Whole white alabastrum(diploid) 2	0.938
	CNS0095596	Whole white alabastrum(diploid) 3	0.322
	CNS0095597	Whole white alabastrum(diploid) 4	1.144
	CNS0095598	Silvery flower (diploied) 1	2.033
	CNS0095599	Silvery flower (diploied) 2	2.075
	CNS0095600	Silvery flower (diploied) 3	2.452
	CNS0095601	Golden flower (diploid) 1	3.580
	CNS0095602	Golden flower (diploid) 2	3.248
	CNS0095603	Golden flower (diploid) 3	3.460
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.964
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.011
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.005
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.572
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.193
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	3.935
	CNS0095611	Silvery flower (tetraploid) 2	1.754
	CNS0095612	Silvery flower (tetraploid) 3	0.268
	CNS0095613	Golden flower (tetraploid) 1	1.631
	CNS0095614	Golden flower (tetraploid) 2	1.873
	CNS0095615	Golden flower (tetraploid) 3	0.747
CRA001975	CRR073297	Stem 1	2.365
	CRR073298	Stem 2	2.037
	CRR073299	Stem 3	1.517
	CRR073300	Leaf 1	0.359
	CRR073301	Leaf 2	0.374
	CRR073302	Leaf 3	1.091
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.111
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.052
	CRR073309	Second white 1	0.053
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.005
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.475
	CRR073316	Gold flowering 2	0.894
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	4.854
	CRR073319	Tawny withering 2	4.601
	CRR073320	Tawny withering 3	1.456