Detail information of GWHGAAZE025886


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP08206.11.7646E-120unnamed protein product [Coffea canephora]
Swissprottr|O82199|C3H20_ARATH8E-97Zinc finger CCCH domain-containing protein 20
trEMBLtr|A0A068UIE2|A0A068UIE2_COFCA7E-121Coffea canephora DH200=94 genomic scaffold, scaffold_31 {ECO:0000313|EMBL:CDP08206.1}
TAIR10AT2G19810.11E-79CCCH-type zinc finger family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6959068869591524-
GWHAAZE00000007mRNA6959068869591524-
GWHAAZE00000007exon6959068869591524-
GWHAAZE00000007CDS6959068869591524-
Transcript Sequence

Network for GWHGAAZE025886

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf45.495
SRR3591706second leaf34.902
SRR3591707mature leaf23.252
SRR3591708Shoot apex172.306
SRR3591709Stem32.541
SRR3591710White floral bud40.447
SRR3591711White flower59.054
SRR3591712Green floral bud14.473
SRR3591713Yellow flower56.858
SRP173429 SRR8316895Juvenile bud stage 8.885
SRR8316896Juvenile bud stage 13.773
SRR8316897Juvenile bud stage 8.871
SRR8316894Third green stage 3.197
SRR8316900Third green stage 2.888
SRR8316901Third green stage 2.927
SRR8316898Complete white stage 4.086
SRR8316899Complete white stage 9.685
SRR8316903Complete white stage 25.355
SRR8316902Silver flowering stage8.325
SRR8316904Silver flowering stage10.971
SRR8316905Silver flowering stage6.312
SRR8316906Gold flowering stage 49.942
SRR8316907Gold flowering stage 45.342
SRR8316908Gold flowering stage 54.310
SRP132670SRR6706286Control11.405
SRR6706287Light intensity 50%4.785
SRR6706288Light intensity 20%3.855
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.352
CNS0095593Slightly white alabastrum(diploid) 27.463
CNS0095594Slightly white alabastrum(diploid) 313.401
CNS0095595Whole white alabastrum(diploid) 26.304
CNS0095596Whole white alabastrum(diploid) 34.030
CNS0095597Whole white alabastrum(diploid) 44.167
CNS0095598Silvery flower (diploied) 176.349
CNS0095599Silvery flower (diploied) 239.185
CNS0095600Silvery flower (diploied) 346.363
CNS0095601Golden flower (diploid) 1128.046
CNS0095602Golden flower (diploid) 2146.034
CNS0095603Golden flower (diploid) 3144.443
CNS0095604Slightly white alabastrum(tetraploid) 16.100
CNS0095605Slightly white alabastrum(tetraploid) 26.780
CNS0095606Slightly white alabastrum(tetraploid) 312.092
CNS0095607Whole white alabastrum(tetraploid) 18.291
CNS0095608Whole white alabastrum(tetraploid) 20.616
CNS0095609Whole white alabastrum(tetraploid) 32.331
CNS0095610Silvery flower (tetraploid) 125.334
CNS0095611Silvery flower (tetraploid) 271.994
CNS0095612Silvery flower (tetraploid) 312.595
CNS0095613Golden flower (tetraploid) 142.064
CNS0095614Golden flower (tetraploid) 242.704
CNS0095615Golden flower (tetraploid) 3163.621
CRA001975CRR073297Stem 189.023
CRR073298Stem 259.053
CRR073299Stem 3120.575
CRR073300Leaf 15.945
CRR073301Leaf 29.742
CRR073302Leaf 311.240
CRR073303Juvenile bud 16.400
CRR073304Juvenile bud 22.864
CRR073305Juvenile bud 315.514
CRR073306Third green 14.011
CRR073307Third green 22.837
CRR073308Third green 32.826
CRR073309Second white 18.971
CRR073310Second white 211.230
CRR073311Second white 314.875
CRR073312Silver flowering 123.345
CRR073313Silver flowering 224.516
CRR073314Silver flowering 315.385
CRR073315Gold flowering 110.782
CRR073316Gold flowering 213.666
CRR073317Gold flowering 323.305
CRR073318Tawny withering 199.600
CRR073319Tawny withering 228.775
CRR073320Tawny withering 379.545