Gene detail

Detail information of GWHGAAZE025893

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011093340.1	0	PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase HSL1 [Sesamum indicum]
COG	YP_004775215.1	2E-50	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	0	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|B9RS14\|B9RS14_RICCO	0	Serine-threonine protein kinase, plant-type, putative {ECO:0000313\|EMBL:EEF45874.1}
TAIR10	AT5G25930.1	0	Protein kinase family protein with leucine-rich repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	69733915	69737787	-
GWHAAZE00000007	mRNA	69733915	69737787	-
GWHAAZE00000007	exon	69733915	69734363	-
GWHAAZE00000007	exon	69735174	69737787	-
GWHAAZE00000007	CDS	69735174	69737787	-
GWHAAZE00000007	CDS	69733915	69734363	-

Transcript Sequence
>GWHTAAZE025927 ATGACAAAGATACCCCTACACATCCGCCTCTTCTTTCTTCTCACCCTCCTGTCCTCAACCGTAAATTCGCAATTCTTCCCAACCGAAAGAACCACCCTCCTCAACCTCAAGCAAAGATGGGGAAACCCACCTGCCCTCCAAGCCTGGAACATAACATCCTCACCGTGCGACTGGCCGGAAATTACCTGCTCCTCCACCGGTACTGTCACCGGACTAATCCTCCGGGAGAAGAACATTACAGTCCCCATCCCACCGTCCATCTGTAACCTCCAAAACTTAACAGAACTCGACCTCGCTTACAATTACATCCCGGGAACATTCCCCAAAGTCCTTTACAACTGCTCCAATCTCCAAAAACTTGACCTCTCTCAGAACTACTTCGTCGGCCAACTTCCGGCCGATATTGACCGGATTTCCAACCTCCGGTATATTGATCTTGGTGCTAACAACTTTAGTGGTGATATACCTCCGGCTATCGGCCGGTTATCGCAGCTAGAGAGTCTTCGTTTGTATCAGAATTTGTTCAATGGTACTTTTCCGGCTGAAATCGGAGATTTGTTGCAGCTCGAAAATCTACTTATGGCGTACTGCGGCTTTTCGCCGGCGGTGATTCCGACGGAGTTCGGGAAGTTGAAGAGATTGAAGTTTTTGTGGATGACGCAGACGAATTTGATAGGGGCAATACCGAAAAGTTTTTCGAATTTATCGAGTCTCGAACGTGTGGATCTTTCTGGAAATGATTTGAGCGGTATGATTCCGCAGGGATTGTTTTCGTTGAAGAATCTGAGTGTTGTGTATTTGCAGAATAATCGATTATCAGGTCCGATTCCGTCAGTGATCGAATCGATCAACTTAAAAAAAATTGATCTTTCCACGAATAATTTGACCGGCTCTATTCCTGAAGATTTTGGCAAATTACAGGAACTGGAGCTTTTGAATCTGTTCAACAACCAATTGTTCGGGCAGATTCCATCAGCAATAGGCCTCATTCCGGCACTGAAGAATTTTAGGGTTTTCAGCAACAACTTGAGCGGAGAATTACCTCCTGAATTAGGCCTTCATTCGAGACTCGAAGCGTTTGAAGTACCGGACAATCATTTCACTGGAAAACTACCAGAGAATTTGTGCGCCGGTGGGACTTTGTTCGGTTTAGTTGCTTTCTCCAACAATCTCACCGGAGAAATACCGAAATCCATCGGTAGTTGTGATAGTCTCCGCACAGTTCAGATCTTTAACAACAATTTTTCCGGTGAAGTTCCGGTAGGGCTTTGGACATCTCTGAATCTATCAAGTTTGATGATAAGTGGCAACTCTTTTTCCGGCGAACTTCCTAGCAAATTAGCGTGGAATATGACGCGGTTAGAGATCAGTGACAACAAGTTTTCGGGTCCAATTCCTGATGAAATTTCTTCTTGGTCGAACCTAGTTGTGTTCAAAGCTAGCAACAATCGGTTTTCTGGAGAAATTCCACTGGAACTCACCGGTCTTCCTCAGCTCAACACTCTTATGCTCGACGGGAATTTGTTTTCCGGCCAACTTCCTGCGGATATCAAGTCATGGAAGTCACTAACAATATTGAACCTAGCAAAAAACAGCCTCTCGGGACCGATCCCACCAGTGATCGGCTCGTTACCGGACCTTCTAGATCTAGACTTATCGGGAAACCAATTGTCCGGACCAATTCCGGTCGAACTAGCCCGTTTGAGGCTAACTTCATTGAACTTGTCCTCCAACAAACTCATCGGAAAAATCCCCAGCGAATACGACAACTTCGCTTACGAAAACAGTTTCTTGAACAATTCAAACCTCTGTGCCATCACCCTAGTTCCCAATCTTCGAAACTGTAACTTGAAAACACCCAATTCGAAAAAGTTGTCACCCAAAATCCTAGCCATGATCTTAGTCCTAGCCGTGGCAATTTTCCTAGTTACTGTTTTATTGACTTTGTGTATGGTCAGTGACTACAGAACAAAGAAGCACAAACGTGATATTGCTACATGGAAACTAACCTCATTCCAGAGACTAGATTTTACGGAAGCAAATATTCTTTCTAGTTTAACCGAAGGTAACATGATCGGCAGTGGCGGATCCGGAAAAGTGTACCAAATATCCATAGGCAGGCAAGGAGAATACGTAGCAGTCAAAAGAATATATAACGTTAGCAAATTAGACAGTCTGCTCGAAAAAGAGTTCTTGGCCGAGGTTCAGATACTGGGGACGATTAGGCACTCAAATATAGTGAAGCTTCTTTGTTGTATATCTAGTGAAGATTCAAAGTTACTTGTTTACGAGTATATGGAGAATCAGAGCCTTGATAAATGGTTACATGGGAAGAAAAGAAGGCCGGTTTTGTTGAGTGGACTGGTTGATCACGTTGTTTTGGATTGGCCTACGAGGATGCAAATTGCGGTTGGTGCTGCTCAAGGGCTTTGTTATATGCATCATGATTGTTCTCCTCCGATTATTCATCGAGATGTGAAGTCGAGTAATATTTTGCTGGATAAGGAGTTCAAGTCGAGGATAGCAGATTTTGGGTTAGCTAAGATTTTGATGAGGCGTGGTGAGGCTAATACTATGTCTGCTGTTGCGGGTTCGTTTGGCTACATTGCTCCAGAATATGCCTATACAACAAGAATAAATGAAAAGATCGATGTTTATAGCTTTGGAGTTGTACTTCTCGAACTAGTGACAGGAAGAGAACCCAATGAAGGAGATACAGATATAAACCTAGCTGAATGGGCATGGAGATACTACGGCGAAGAAAAATCAATCACTGATATAATAGACCAGGAGATCAAGCAACAATGTTACTTGGAGGATATGATCACTGTATTCAAATTAGGGCTCATTTGTACAAGCACACTGCCTTCAAGTAGGCCTTCGATGAAAGAGGTTCTTCGAATGCTTCGACGATGTAGTCCTTTTGATGCCTATGAAGGAAAGAGGGTGGGTAGTGAGTATGATGTTGCTCCATTGCTTCATACTGATAGTTACCTTTCGAGTTATAAGAAGCGGAGTAAGAAAGTAGCTGATGATGAAGACGATAGCTTTCGAATAGTTTGA

Network for GWHGAAZE025893

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	28	64	1.40E-05
PF13855.7	LRR_8	72	126	6.50E-07
PF13855.7	LRR_8	261	319	1.50E-06
PF13855.7	LRR_8	522	580	2.50E-07
PF00069.26	Pkinase	688	967	1.20E-45

Protein Sequence

>GWHPAAZE025911
MTKIPLHIRLFFLLTLLSSTVNSQFFPTERTTLLNLKQRWGNPPALQAWNITSSPCDWPEITCSSTGTVTGLILREKNITVPIPPSICNLQNLTELDLAYNYIPGTFPKVLYNCSNLQKLDLSQNYFVGQLPADIDRISNLRYIDLGANNFSGDIPPAIGRLSQLESLRLYQNLFNGTFPAEIGDLLQLENLLMAYCGFSPAVIPTEFGKLKRLKFLWMTQTNLIGAIPKSFSNLSSLERVDLSGNDLSGMIPQGLFSLKNLSVVYLQNNRLSGPIPSVIESINLKKIDLSTNNLTGSIPEDFGKLQELELLNLFNNQLFGQIPSAIGLIPALKNFRVFSNNLSGELPPELGLHSRLEAFEVPDNHFTGKLPENLCAGGTLFGLVAFSNNLTGEIPKSIGSCDSLRTVQIFNNNFSGEVPVGLWTSLNLSSLMISGNSFSGELPSKLAWNMTRLEISDNKFSGPIPDEISSWSNLVVFKASNNRFSGEIPLELTGLPQLNTLMLDGNLFSGQLPADIKSWKSLTILNLAKNSLSGPIPPVIGSLPDLLDLDLSGNQLSGPIPVELARLRLTSLNLSSNKLIGKIPSEYDNFAYENSFLNNSNLCAITLVPNLRNCNLKTPNSKKLSPKILAMILVLAVAIFLVTVLLTLCMVSDYRTKKHKRDIATWKLTSFQRLDFTEANILSSLTEGNMIGSGGSGKVYQISIGRQGEYVAVKRIYNVSKLDSLLEKEFLAEVQILGTIRHSNIVKLLCCISSEDSKLLVYEYMENQSLDKWLHGKKRRPVLLSGLVDHVVLDWPTRMQIAVGAAQGLCYMHHDCSPPIIHRDVKSSNILLDKEFKSRIADFGLAKILMRRGEANTMSAVAGSFGYIAPEYAYTTRINEKIDVYSFGVVLLELVTGREPNEGDTDINLAEWAWRYYGEEKSITDIIDQEIKQQCYLEDMITVFKLGLICTSTLPSSRPSMKEVLRMLRRCSPFDAYEGKRVGSEYDVAPLLHTDSYLSSYKKRSKKVADDEDDSFRIV

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.093
	SRR3591706	second leaf	4.379
	SRR3591707	mature leaf	11.960
	SRR3591708	Shoot apex	3.764
	SRR3591709	Stem	46.356
	SRR3591710	White floral bud	11.340
	SRR3591711	White flower	39.641
	SRR3591712	Green floral bud	7.690
	SRR3591713	Yellow flower	46.190
SRP173429	SRR8316895	Juvenile bud stage	38.064
	SRR8316896	Juvenile bud stage	25.216
	SRR8316897	Juvenile bud stage	31.101
	SRR8316894	Third green stage	10.887
	SRR8316900	Third green stage	15.867
	SRR8316901	Third green stage	18.364
	SRR8316898	Complete white stage	2.734
	SRR8316899	Complete white stage	29.550
	SRR8316903	Complete white stage	5.668
	SRR8316902	Silver flowering stage	7.904
	SRR8316904	Silver flowering stage	11.553
	SRR8316905	Silver flowering stage	5.235
	SRR8316906	Gold flowering stage	49.811
	SRR8316907	Gold flowering stage	35.806
	SRR8316908	Gold flowering stage	54.242
SRP132670	SRR6706286	Control	9.510
	SRR6706287	Light intensity 50%	9.184
	SRR6706288	Light intensity 20%	8.266
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.905
	CNS0095593	Slightly white alabastrum(diploid) 2	18.108
	CNS0095594	Slightly white alabastrum(diploid) 3	16.825
	CNS0095595	Whole white alabastrum(diploid) 2	14.150
	CNS0095596	Whole white alabastrum(diploid) 3	3.259
	CNS0095597	Whole white alabastrum(diploid) 4	9.762
	CNS0095598	Silvery flower (diploied) 1	47.600
	CNS0095599	Silvery flower (diploied) 2	50.905
	CNS0095600	Silvery flower (diploied) 3	40.846
	CNS0095601	Golden flower (diploid) 1	54.957
	CNS0095602	Golden flower (diploid) 2	72.744
	CNS0095603	Golden flower (diploid) 3	73.608
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.284
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.861
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.305
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.725
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.430
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.233
	CNS0095610	Silvery flower (tetraploid) 1	16.015
	CNS0095611	Silvery flower (tetraploid) 2	13.188
	CNS0095612	Silvery flower (tetraploid) 3	14.933
	CNS0095613	Golden flower (tetraploid) 1	11.566
	CNS0095614	Golden flower (tetraploid) 2	25.235
	CNS0095615	Golden flower (tetraploid) 3	20.835
CRA001975	CRR073297	Stem 1	12.039
	CRR073298	Stem 2	7.415
	CRR073299	Stem 3	6.571
	CRR073300	Leaf 1	11.403
	CRR073301	Leaf 2	20.037
	CRR073302	Leaf 3	7.065
	CRR073303	Juvenile bud 1	7.470
	CRR073304	Juvenile bud 2	11.004
	CRR073305	Juvenile bud 3	20.894
	CRR073306	Third green 1	6.308
	CRR073307	Third green 2	4.104
	CRR073308	Third green 3	7.451
	CRR073309	Second white 1	9.248
	CRR073310	Second white 2	12.267
	CRR073311	Second white 3	18.464
	CRR073312	Silver flowering 1	30.946
	CRR073313	Silver flowering 2	27.562
	CRR073314	Silver flowering 3	21.279
	CRR073315	Gold flowering 1	6.158
	CRR073316	Gold flowering 2	15.045
	CRR073317	Gold flowering 3	13.340
	CRR073318	Tawny withering 1	19.954
	CRR073319	Tawny withering 2	39.661
	CRR073320	Tawny withering 3	12.105