Gene detail

Detail information of GWHGAAZE025898

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008220116.1	0	PREDICTED: protein cereblon [Prunus mume]
COG	YP_008515289.1	2E-10	LON domain-containing peptidase
trEMBL	tr\|B9IKG3\|B9IKG3_POPTR	0	ATP-dependent protease La domain-containing family protein {ECO:0000313\|EMBL:EEF02774.1}
TAIR10	AT2G25740.1	7E-134	ATP-dependent protease La (LON) domain protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	69840275	69850021	+
GWHAAZE00000007	mRNA	69840275	69850021	+
GWHAAZE00000007	exon	69840275	69840392	+
GWHAAZE00000007	exon	69840489	69840566	+
GWHAAZE00000007	exon	69840718	69840830	+
GWHAAZE00000007	exon	69840914	69840979	+
GWHAAZE00000007	exon	69843658	69843759	+
GWHAAZE00000007	exon	69844600	69845069	+
GWHAAZE00000007	exon	69847791	69847914	+
GWHAAZE00000007	exon	69848488	69848651	+
GWHAAZE00000007	exon	69849886	69850021	+
GWHAAZE00000007	CDS	69840275	69840392	+
GWHAAZE00000007	CDS	69840489	69840566	+
GWHAAZE00000007	CDS	69840718	69840830	+
GWHAAZE00000007	CDS	69840914	69840979	+
GWHAAZE00000007	CDS	69843658	69843759	+
GWHAAZE00000007	CDS	69844600	69845069	+
GWHAAZE00000007	CDS	69847791	69847914	+
GWHAAZE00000007	CDS	69848488	69848651	+
GWHAAZE00000007	CDS	69849886	69850021	+

Transcript Sequence
>GWHTAAZE025932 ATGATTGCTCATGTTTGTGCCCATTGTTTTATTGGTGCTAGTGATCGTGGTAACGGAGGGGCATCTAGTGAATTTACCTTCAACCCTTATTTGGCATCCTTGCACACATATCTTGGCGAGGTTGAAGACACTCATCATAGACTAGCATTTGTGGACGCTGGTGCAATATTAAAAGTTCCATTATTTTACCTTGAAGGTGTAGTTCTGTTTCCAGAGGCCACCCTTCCTCTACGAGTTATTCAACCTAATTTTGTAGCTGCTGTTGAAAAGGCATTGACACAAGCTGATGCTCCTTATACTATAGGCGTGGTCCGTGTTTCTAGGGATACTGGAAATGGGAGGATAAGATTTGCAACTATTGGGACAACTGCAGAGATTCGGAAGTTCAGGCGTTTAGAAGATGGTTCATTAAATCTACTTACCCGTGGCCAACAGCGTTTTCATTTGAGACGGCGCTGGATTGATATGGACGGAGCACCATGCGGAGAGATCCAAATTATCCAAGAAGATTTACCATTAAGGACGCCTCGCGATGCAGTTGGACGATTGGCTCCATTAAGGAACTTGTTGATATCTAATAATTCTCATCCTAAACAACGCAGCCACAGAGATGAAGACGATGACTCAGATGCAATGTCAGAGGAAAGTTTTGAGAGTGAACTTTCATTAGCAGAAAAAAGATTGCATCAATCTGCACTTGTTTCTTGTTATGGTTCTGAAAGCGGTGATGAATCTACAAGTAGTGATGATGAGAAGTCTGTTAATAACACCCCTCCTGGGTCATTGGATTCACTAAATGAACAAATGAGTGAAAGTAATAGCTGTAGACTTGGGAAGGAATTAATTTCTGAGGGAAAATCTTGCCGAGGGTTTGGATGGAAAAAAGATTCAGTAAACCGGTTGCGGGAAGTTCCCAGAACCTACTGTCCACACTGGGTTTACCCCATTAAAATTCCTGTTTCTGAATCTACAAGGCAGGAGCTTCTTGAGATTGATGGAATTTCCTATAGATTGCGTCGCGAAATCGAGTTGCTTGAGAGTTTTGATCGTGTTCGGTGTAAAATTTGTCAGACTGTTATTGGAAAGCGAAGTGATATGTTGGTGATGTCTAATGAAGGTCCTCTCGGTGCTTATGTTAATCCACATGGTTACGTGCATGAGGTGATGACACTTTATAAAGCAGTTGGCTTAGCACTTATTGGAAGTCCAGTTACAGAAGACAGCTGGTTCCCTGGGTATGCATGGACAATAGTGTATTGTGCAACATGTGAATGCCAAATGGGGTGGCGCTTTACGGCTACAAACAGGAAACTTAAGCCCCGCTCCTTCTGGGCCATTCGCAGCTCTCAAGTTGCCGATGAAACGCACTAA

Network for GWHGAAZE025898

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0112

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02190.17	LON_substr_bdg	58	346	8.10E-35
PF03226.15	Yippee-Mis18	351	449	3.00E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.612
	SRR3591706	second leaf	21.371
	SRR3591707	mature leaf	18.543
	SRR3591708	Shoot apex	24.577
	SRR3591709	Stem	36.017
	SRR3591710	White floral bud	26.805
	SRR3591711	White flower	29.828
	SRR3591712	Green floral bud	21.419
	SRR3591713	Yellow flower	33.138
SRP173429	SRR8316895	Juvenile bud stage	16.658
	SRR8316896	Juvenile bud stage	21.951
	SRR8316897	Juvenile bud stage	12.125
	SRR8316894	Third green stage	9.488
	SRR8316900	Third green stage	24.464
	SRR8316901	Third green stage	21.789
	SRR8316898	Complete white stage	12.904
	SRR8316899	Complete white stage	34.448
	SRR8316903	Complete white stage	20.034
	SRR8316902	Silver flowering stage	12.390
	SRR8316904	Silver flowering stage	18.669
	SRR8316905	Silver flowering stage	10.402
	SRR8316906	Gold flowering stage	28.652
	SRR8316907	Gold flowering stage	23.343
	SRR8316908	Gold flowering stage	24.390
SRP132670	SRR6706286	Control	12.933
	SRR6706287	Light intensity 50%	13.224
	SRR6706288	Light intensity 20%	14.495
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.979
	CNS0095593	Slightly white alabastrum(diploid) 2	18.106
	CNS0095594	Slightly white alabastrum(diploid) 3	13.161
	CNS0095595	Whole white alabastrum(diploid) 2	14.913
	CNS0095596	Whole white alabastrum(diploid) 3	12.617
	CNS0095597	Whole white alabastrum(diploid) 4	12.789
	CNS0095598	Silvery flower (diploied) 1	32.504
	CNS0095599	Silvery flower (diploied) 2	24.418
	CNS0095600	Silvery flower (diploied) 3	35.362
	CNS0095601	Golden flower (diploid) 1	31.576
	CNS0095602	Golden flower (diploid) 2	43.407
	CNS0095603	Golden flower (diploid) 3	38.787
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.314
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.271
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.678
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.545
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.024
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.480
	CNS0095610	Silvery flower (tetraploid) 1	32.939
	CNS0095611	Silvery flower (tetraploid) 2	37.435
	CNS0095612	Silvery flower (tetraploid) 3	31.477
	CNS0095613	Golden flower (tetraploid) 1	25.813
	CNS0095614	Golden flower (tetraploid) 2	29.923
	CNS0095615	Golden flower (tetraploid) 3	37.460
CRA001975	CRR073297	Stem 1	22.222
	CRR073298	Stem 2	19.409
	CRR073299	Stem 3	17.163
	CRR073300	Leaf 1	20.252
	CRR073301	Leaf 2	17.999
	CRR073302	Leaf 3	15.147
	CRR073303	Juvenile bud 1	18.411
	CRR073304	Juvenile bud 2	15.501
	CRR073305	Juvenile bud 3	14.528
	CRR073306	Third green 1	8.142
	CRR073307	Third green 2	8.505
	CRR073308	Third green 3	10.868
	CRR073309	Second white 1	8.114
	CRR073310	Second white 2	14.292
	CRR073311	Second white 3	12.030
	CRR073312	Silver flowering 1	10.682
	CRR073313	Silver flowering 2	8.528
	CRR073314	Silver flowering 3	8.733
	CRR073315	Gold flowering 1	18.186
	CRR073316	Gold flowering 2	26.976
	CRR073317	Gold flowering 3	13.883
	CRR073318	Tawny withering 1	26.099
	CRR073319	Tawny withering 2	20.813
	CRR073320	Tawny withering 3	26.069