Gene detail

Detail information of GWHGAAZE025900

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDY64988.1	3.7534E-166	BnaA05g34870D [Brassica napus]
COG	YP_007469167.1	2E-87	aldo/keto reductase, diketogulonate reductase
Swissprot	tr\|Q0PGJ6\|AKRC9_ARATH	6E-166	Aldo-keto reductase family 4 member C9
trEMBL	tr\|A0A078JBL0\|A0A078JBL0_BRANA	1E-166	BnaA05g34870D protein {ECO:0000313\|EMBL:CDY64988.1}
TAIR10	AT2G37770.2	1E-132	NAD(P)-linked oxidoreductase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	69858494	69866689	-
GWHAAZE00000007	mRNA	69858494	69866689	-
GWHAAZE00000007	exon	69858494	69859465	-
GWHAAZE00000007	exon	69866538	69866689	-
GWHAAZE00000007	five_prime_UTR	69866661	69866689	-
GWHAAZE00000007	CDS	69866538	69866660	-
GWHAAZE00000007	CDS	69858494	69859465	-

Transcript Sequence
>GWHTAAZE025934 TGTAGAAAAAAAAGTAGAGCTACATAGAAATGGAAATGGAAATGGCATTGCAGGGTGAGCACAAGTGGTCACTCGCTGTGTTAAGCTCTGTCGTCGTTTTGATCATCACTTCTCCTTCTCTTGTGTTTCGCCTTTATCGCCTACTTGCAAAGGCATTTACGCGTTTTCGCCCCAAAAACAAAAAATCCATTCAATCCTTCGAACTGACCACCGAGGCAAAGATACCGGCGGTCGGCCTTGGCACCTGGCAAGCCAAGCCCGGCGTAGTTGGCCAAGCCGTTGAGACTGCCATCAAGCTGGGCTACCACCACATCGACTGCGCCCACAGCTATGGCAACGAGAAAGAAATCGGCTCAACCCTTAAAAAACTATTCGAAAACGGCATAATAAAACGTGAAGAACTCTGGATCACATCAAAACTCTGGCACGCCGATCAAGCCCCAGAAGACGTACCAATTGCCCTACAAAGAACTCTCGAAGAGTTACAACTTGATTATGTGGACTTATATTTAATCCACTGGCCAATGCGTCTTAAAAAAGGCACATATGGTACAAATCCCAATAATTTCCTAGCGCCCGACATACCAAGTACATGGAAAGCGATGGAAATGCTATATGATACAGGCAAGGCGAGAGCAATTGGGGTTTGTAACTTTTCCACCAAAAAACTAGCGGATCTACTAGCTATAGCTCGAGTAAGGCCTTCCGTTGTACAAGTGGAGTGCCACCCAATATGGCAACAAAAAAAGCTACACGAGTTTTGCCAATCAAATGGGATTCATTTATCGGCTTATTCGCCATTGGGTTCACCAGGGACTTCGTGGATCAACGGGGGAGTGCTCGATCTTCCGGTGGTGAAAATGGTGGCCGAAAATTTGGGGAAAACAGCAGCGCAAGTGGTGCTAAGGTGGGGATTGCAAATGGGGCATAGTGTGATTCCCAAGAGTACAAATGAAGGGAGGCTGAAGGAGAACTTGGATGTGATGGATTGGTGCATACCTGATGAGTTGATGAGGAAGTTTGATGAGATTGAACAGAGGAGATTGGTGAGAGGGGAGTTTTATGTGCATGAGACTTTAAGTCCTTACAAGACACTTGATGAACTTTGGGATGGTGAGATTTGA

Network for GWHGAAZE025900

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00248.22	Aldo_ket_red	68	335	1.20E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00002	AKR1A1, adh	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Degradation of aromatic compounds	map01220
		Glycolysis / Gluconeogenesis	map00010
		Pentose and glucuronate interconversions	map00040
		Glycerolipid metabolism	map00561
		Caprolactam degradation	map00930

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.679
	SRR3591706	second leaf	5.447
	SRR3591707	mature leaf	0.736
	SRR3591708	Shoot apex	5.051
	SRR3591709	Stem	6.088
	SRR3591710	White floral bud	1.113
	SRR3591711	White flower	1.161
	SRR3591712	Green floral bud	4.042
	SRR3591713	Yellow flower	0.642
SRP173429	SRR8316895	Juvenile bud stage	1.518
	SRR8316896	Juvenile bud stage	2.754
	SRR8316897	Juvenile bud stage	1.359
	SRR8316894	Third green stage	0.840
	SRR8316900	Third green stage	2.311
	SRR8316901	Third green stage	3.139
	SRR8316898	Complete white stage	0.786
	SRR8316899	Complete white stage	1.948
	SRR8316903	Complete white stage	1.154
	SRR8316902	Silver flowering stage	0.490
	SRR8316904	Silver flowering stage	0.600
	SRR8316905	Silver flowering stage	0.179
	SRR8316906	Gold flowering stage	1.449
	SRR8316907	Gold flowering stage	0.234
	SRR8316908	Gold flowering stage	1.372
SRP132670	SRR6706286	Control	2.889
	SRR6706287	Light intensity 50%	1.813
	SRR6706288	Light intensity 20%	2.012
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.525
	CNS0095593	Slightly white alabastrum(diploid) 2	6.082
	CNS0095594	Slightly white alabastrum(diploid) 3	6.093
	CNS0095595	Whole white alabastrum(diploid) 2	2.186
	CNS0095596	Whole white alabastrum(diploid) 3	5.340
	CNS0095597	Whole white alabastrum(diploid) 4	2.843
	CNS0095598	Silvery flower (diploied) 1	0.925
	CNS0095599	Silvery flower (diploied) 2	3.956
	CNS0095600	Silvery flower (diploied) 3	1.399
	CNS0095601	Golden flower (diploid) 1	2.336
	CNS0095602	Golden flower (diploid) 2	1.248
	CNS0095603	Golden flower (diploid) 3	1.384
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.541
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.144
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.963
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.413
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.139
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.285
	CNS0095610	Silvery flower (tetraploid) 1	2.489
	CNS0095611	Silvery flower (tetraploid) 2	2.596
	CNS0095612	Silvery flower (tetraploid) 3	2.973
	CNS0095613	Golden flower (tetraploid) 1	0.449
	CNS0095614	Golden flower (tetraploid) 2	1.185
	CNS0095615	Golden flower (tetraploid) 3	0.385
CRA001975	CRR073297	Stem 1	2.059
	CRR073298	Stem 2	1.532
	CRR073299	Stem 3	1.683
	CRR073300	Leaf 1	3.787
	CRR073301	Leaf 2	3.688
	CRR073302	Leaf 3	3.939
	CRR073303	Juvenile bud 1	2.302
	CRR073304	Juvenile bud 2	2.311
	CRR073305	Juvenile bud 3	2.158
	CRR073306	Third green 1	0.368
	CRR073307	Third green 2	2.662
	CRR073308	Third green 3	2.952
	CRR073309	Second white 1	0.704
	CRR073310	Second white 2	0.411
	CRR073311	Second white 3	0.494
	CRR073312	Silver flowering 1	0.290
	CRR073313	Silver flowering 2	0.382
	CRR073314	Silver flowering 3	0.730
	CRR073315	Gold flowering 1	0.528
	CRR073316	Gold flowering 2	0.246
	CRR073317	Gold flowering 3	0.121
	CRR073318	Tawny withering 1	2.214
	CRR073319	Tawny withering 2	1.167
	CRR073320	Tawny withering 3	0.864