Gene detail

Detail information of GWHGAAZE025921

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011081800.1	2.0792E-145	PREDICTED: myosin heavy chain kinase B-like [Sesamum indicum]
COG	YP_001522724.1	2E-21	WD repeat-containing protein
Swissprot	tr\|Q0DYP5\|C3H17_ORYSJ	0.000000001	Zinc finger CCCH domain-containing protein 17
trEMBL	tr\|A0A068V6H3\|A0A068V6H3_COFCA	3E-143	Coffea canephora DH200=94 genomic scaffold, scaffold_118 {ECO:0000313\|EMBL:CDP16201.1}
TAIR10	AT3G50390.1	1E-46	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	70328937	70329767	-
GWHAAZE00000007	mRNA	70328937	70329767	-
GWHAAZE00000007	exon	70328937	70329767	-
GWHAAZE00000007	CDS	70328937	70329767	-

Transcript Sequence
>GWHTAAZE025955 ATGGCTTATTACCACGCAGAGGGGCTTTTGTACACAGGTTCTTGGGACAATTCGGTGAACACTTGGAGGGTATCCGATAATGTTTGCGTAGATTCATTCGTAGCCCACGAAGATCAAATCAACGGAATCTCAATCAATCAAGACGACGGGTGCGTTTTCACATGCTCATCAGATGGATCTATTAGAATTTGGAGGCGACTACATCAACAAAGTTCCCACACTTTAACAATGACACTAAAATTCCAACCTTCCCCCGTTAATGCTTTGACGTTGAGTACATCAGTAGGATCTTGTTTTCTATACTCGGGATCATCGGACGGGTTGATTAATTTCTGGGAAAAAGAGAAATTTTCGAGCAGATTCAACCACGGAGGGTTTCTACAAGGGCATAGATTTGCGGTTATGTGTTTGGCGGCGATCGAGAAGCTGGTGTTTAGTGGGTCGGAAGATACGACGATAAGGGTGTGGAGGAGGGAGGAAGGGAGCTGTTTGCACGAGTGTTTGGCAGTGGTGGACGCTCATCGGGGTCCGGTTAGGTGCCTGGCGGCAGCGATGGAGGTGGAGAAGGTGACGGTGATGGGATTTTTGCTTTATAGTGCTGGGTTTGATCAGACATTTAAGGTGTGGAGAATAAAAGTTTTGCCTGAGGAGAAAAATAATAATAATAATAATAATAATAATAATGGGAGGAATATAAATATGAAGATGAAAATGAGGATTAATAGTGGTATGGAGTATGAGATGAGCCCTGTTTTGTCTCCTTCTTGGGTGGAGAAGAAGCAGCTTCATGATCATAGTAATAATACTCATCATCATCACCCTTTCCATTAG

Network for GWHGAAZE025921

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	29	64	4.70E-05
PF00400.33	WD40	126	156	0.0053
PF00400.33	WD40	166	209	0.18

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.859
	SRR3591707	mature leaf	0.253
	SRR3591708	Shoot apex	1.150
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	3.144
	SRR3591711	White flower	3.024
	SRR3591712	Green floral bud	0.961
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.169
	SRR8316896	Juvenile bud stage	2.570
	SRR8316897	Juvenile bud stage	0.811
	SRR8316894	Third green stage	0.663
	SRR8316900	Third green stage	1.017
	SRR8316901	Third green stage	1.926
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.546
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.095
	SRR8316904	Silver flowering stage	0.050
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	2.206
	SRR6706287	Light intensity 50%	2.557
	SRR6706288	Light intensity 20%	2.615
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.729
	CNS0095593	Slightly white alabastrum(diploid) 2	0.665
	CNS0095594	Slightly white alabastrum(diploid) 3	1.328
	CNS0095595	Whole white alabastrum(diploid) 2	0.229
	CNS0095596	Whole white alabastrum(diploid) 3	0.714
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.154
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.116
	CNS0095602	Golden flower (diploid) 2	0.070
	CNS0095603	Golden flower (diploid) 3	0.060
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.530
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.395
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.277
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.321
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.278
	CNS0095610	Silvery flower (tetraploid) 1	0.173
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.247
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.475
	CRR073298	Stem 2	3.786
	CRR073299	Stem 3	5.451
	CRR073300	Leaf 1	0.803
	CRR073301	Leaf 2	1.979
	CRR073302	Leaf 3	2.008
	CRR073303	Juvenile bud 1	0.210
	CRR073304	Juvenile bud 2	0.271
	CRR073305	Juvenile bud 3	1.149
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.110
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.084
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.277
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000