Gene detail

Detail information of GWHGAAZE025931

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009367482.1	1.7529E-127	PREDICTED: tocopherol cyclase, chloroplastic-like [Pyrus x bretschneideri]
Swissprot	tr\|Q94FY7\|TOCC_ARATH	2E-112	Tocopherol cyclase, chloroplastic (Precursor)
trEMBL	tr\|A0A067KD96\|A0A067KD96_JATCU	2E-126	Uncharacterized protein {ECO:0000313\|EMBL:KDP34191.1}
TAIR10	AT4G32770.1	3E-92	tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	70430375	70433898	-
GWHAAZE00000007	mRNA	70430375	70433898	-
GWHAAZE00000007	exon	70430375	70430768	-
GWHAAZE00000007	exon	70432030	70432179	-
GWHAAZE00000007	exon	70432615	70432731	-
GWHAAZE00000007	exon	70433280	70433387	-
GWHAAZE00000007	exon	70433723	70433820	-
GWHAAZE00000007	exon	70433889	70433898	-
GWHAAZE00000007	CDS	70433889	70433898	-
GWHAAZE00000007	CDS	70433723	70433820	-
GWHAAZE00000007	CDS	70433280	70433387	-
GWHAAZE00000007	CDS	70432615	70432731	-
GWHAAZE00000007	CDS	70432030	70432179	-
GWHAAZE00000007	CDS	70430592	70430768	-
GWHAAZE00000007	three_prime_UTR	70430375	70430591	-

Transcript Sequence
>GWHTAAZE025965 ATGTATACTTGTTGGATAGAGTGGGATGGTGAAAGGTATGAGTTCCAAAATGCACCTTCTTATTCTGAAAAGAATTGGGGTGGAGCCTTCCCAAGAAAGTGGTTTTGGGTTCAATGTAATGTATTTGAAGGTGCTAGTGGAGAAGTTTCTTTGACTGCTGGTGGTGGATTGAGGCAACTGCCTGGATTGAGTGAGAACTTTGAAAATGCTGCACTGATTGCAGTTCACCATGAAGGAGTTTTCTATGAATTTGTGCCGTGGAATGGAGTTGTTAGTTGGGAAATTTCTCCATGGGGTCACTGGTGCTTGTCTGCCGAGAACAAAACACATAAGGTAGAATTGGAGGCAACGACTAAGGAACCAGGTGTGACATTACAGGCTCCCACCTCAGAAGCCGGGCTTGCTCCAGCTTGTAGAGATAATTGCCACGGTGATTTAAGACTGCAACTTTGGGAACGAAGATATGATGGCAGTAAGGGGAAGCTTATTTTGGATGTCAAAAGCAACGTGGCGGCAGTTGAAGTTGGAGGAGGACCGTGGTTTAACACGTGGAAGGGCAAGACATTTATGCCCGAAATCATTAACCGTGCTCTTAATGTACCAGTTGATATCGAGGGGATATTCGGATTGGTCCCCTTGCTCAAACCCCCGGGTTTATAAACTGGTAATTTAAATGATATGGTAGTAGGCTAAATGTGCGAAAGATGTAACGTTAGCATGAAATTTTAAAGATGTTTGTATATATGTAGTAACATGTACTTGGAGCAAAATGGATGGGTAGAAGTGGGGGCTGATTGGAACTTGAAAGTTAAAATTCATTTGTTTTTGTAAATTTGGGGTTGGGCCAGCTATGTGGAAGAAAGGAACTAAAACCTTG

Network for GWHGAAZE025931

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14249.7	Tocopherol_cycl	3	177	1.30E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09834	VTE1, SXD1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

GO term	Ontology	Name
GO:0009976	molecular_function	tocopherol cyclase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.268
	SRR3591706	second leaf	2.982
	SRR3591707	mature leaf	1.356
	SRR3591708	Shoot apex	7.789
	SRR3591709	Stem	3.670
	SRR3591710	White floral bud	3.467
	SRR3591711	White flower	1.283
	SRR3591712	Green floral bud	3.633
	SRR3591713	Yellow flower	2.366
SRP173429	SRR8316895	Juvenile bud stage	3.894
	SRR8316896	Juvenile bud stage	11.858
	SRR8316897	Juvenile bud stage	2.398
	SRR8316894	Third green stage	2.092
	SRR8316900	Third green stage	5.323
	SRR8316901	Third green stage	4.632
	SRR8316898	Complete white stage	1.676
	SRR8316899	Complete white stage	4.573
	SRR8316903	Complete white stage	3.107
	SRR8316902	Silver flowering stage	1.208
	SRR8316904	Silver flowering stage	1.523
	SRR8316905	Silver flowering stage	0.366
	SRR8316906	Gold flowering stage	1.537
	SRR8316907	Gold flowering stage	1.573
	SRR8316908	Gold flowering stage	2.173
SRP132670	SRR6706286	Control	5.708
	SRR6706287	Light intensity 50%	5.298
	SRR6706288	Light intensity 20%	5.068
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.439
	CNS0095593	Slightly white alabastrum(diploid) 2	9.406
	CNS0095594	Slightly white alabastrum(diploid) 3	12.349
	CNS0095595	Whole white alabastrum(diploid) 2	4.981
	CNS0095596	Whole white alabastrum(diploid) 3	5.293
	CNS0095597	Whole white alabastrum(diploid) 4	4.597
	CNS0095598	Silvery flower (diploied) 1	5.608
	CNS0095599	Silvery flower (diploied) 2	5.725
	CNS0095600	Silvery flower (diploied) 3	3.430
	CNS0095601	Golden flower (diploid) 1	5.675
	CNS0095602	Golden flower (diploid) 2	4.422
	CNS0095603	Golden flower (diploid) 3	3.340
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.795
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.402
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.571
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.680
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.288
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.969
	CNS0095610	Silvery flower (tetraploid) 1	2.230
	CNS0095611	Silvery flower (tetraploid) 2	3.522
	CNS0095612	Silvery flower (tetraploid) 3	2.097
	CNS0095613	Golden flower (tetraploid) 1	4.526
	CNS0095614	Golden flower (tetraploid) 2	3.398
	CNS0095615	Golden flower (tetraploid) 3	1.740
CRA001975	CRR073297	Stem 1	11.572
	CRR073298	Stem 2	9.566
	CRR073299	Stem 3	8.576
	CRR073300	Leaf 1	5.025
	CRR073301	Leaf 2	6.625
	CRR073302	Leaf 3	4.363
	CRR073303	Juvenile bud 1	4.172
	CRR073304	Juvenile bud 2	3.387
	CRR073305	Juvenile bud 3	4.191
	CRR073306	Third green 1	0.266
	CRR073307	Third green 2	0.341
	CRR073308	Third green 3	1.027
	CRR073309	Second white 1	1.340
	CRR073310	Second white 2	1.535
	CRR073311	Second white 3	1.815
	CRR073312	Silver flowering 1	2.137
	CRR073313	Silver flowering 2	1.579
	CRR073314	Silver flowering 3	0.628
	CRR073315	Gold flowering 1	0.821
	CRR073316	Gold flowering 2	1.798
	CRR073317	Gold flowering 3	1.646
	CRR073318	Tawny withering 1	1.906
	CRR073319	Tawny withering 2	1.580
	CRR073320	Tawny withering 3	2.055