Detail information of GWHGAAZE025934


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004291189.11.84572E-92PREDICTED: tocopherol cyclase, chloroplastic-like [Fragaria vesca subsp. vesca]
Swissprottr|Q6K7V6|TOCC_ORYSJ4E-85Probable tocopherol cyclase, chloroplastic (Precursor)
trEMBLtr|M5XDM1|M5XDM1_PRUPE9E-93Uncharacterized protein {ECO:0000313|EMBL:EMJ23541.1}
TAIR10AT4G32770.13E-68tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7044979670455241-
GWHAAZE00000007mRNA7044979670455241-
GWHAAZE00000007exon7045508570455241-
GWHAAZE00000007exon7045182670451905-
GWHAAZE00000007exon7045096870451044-
GWHAAZE00000007exon7044979670449976-
GWHAAZE00000007CDS7045508570455241-
GWHAAZE00000007CDS7045182670451905-
GWHAAZE00000007CDS7045096870451044-
GWHAAZE00000007CDS7044979670449976-
Transcript Sequence

Network for GWHGAAZE025934

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14249.7Tocopherol_cycl11621.20E-51
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K09834VTE1, SXD1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ubiquinone and other terpenoid-quinone biosynthesismap00130

Gene Ontology

GO term OntologyName
GO:0009976molecular_functiontocopherol cyclase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.277
SRR3591706second leaf1.945
SRR3591707mature leaf1.225
SRR3591708Shoot apex4.656
SRR3591709Stem1.268
SRR3591710White floral bud1.631
SRR3591711White flower1.094
SRR3591712Green floral bud4.244
SRR3591713Yellow flower0.614
SRP173429 SRR8316895Juvenile bud stage 3.566
SRR8316896Juvenile bud stage 5.512
SRR8316897Juvenile bud stage 1.693
SRR8316894Third green stage 1.886
SRR8316900Third green stage 3.587
SRR8316901Third green stage 2.891
SRR8316898Complete white stage 1.583
SRR8316899Complete white stage 3.795
SRR8316903Complete white stage 2.102
SRR8316902Silver flowering stage0.739
SRR8316904Silver flowering stage0.729
SRR8316905Silver flowering stage0.539
SRR8316906Gold flowering stage 1.309
SRR8316907Gold flowering stage 2.076
SRR8316908Gold flowering stage 0.835
SRP132670SRR6706286Control3.848
SRR6706287Light intensity 50%4.605
SRR6706288Light intensity 20%3.954
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.373
CNS0095593Slightly white alabastrum(diploid) 24.081
CNS0095594Slightly white alabastrum(diploid) 33.296
CNS0095595Whole white alabastrum(diploid) 22.819
CNS0095596Whole white alabastrum(diploid) 32.542
CNS0095597Whole white alabastrum(diploid) 41.405
CNS0095598Silvery flower (diploied) 12.127
CNS0095599Silvery flower (diploied) 21.621
CNS0095600Silvery flower (diploied) 32.599
CNS0095601Golden flower (diploid) 12.555
CNS0095602Golden flower (diploid) 23.357
CNS0095603Golden flower (diploid) 33.614
CNS0095604Slightly white alabastrum(tetraploid) 13.573
CNS0095605Slightly white alabastrum(tetraploid) 23.069
CNS0095606Slightly white alabastrum(tetraploid) 33.877
CNS0095607Whole white alabastrum(tetraploid) 15.239
CNS0095608Whole white alabastrum(tetraploid) 22.074
CNS0095609Whole white alabastrum(tetraploid) 32.639
CNS0095610Silvery flower (tetraploid) 12.151
CNS0095611Silvery flower (tetraploid) 23.411
CNS0095612Silvery flower (tetraploid) 31.621
CNS0095613Golden flower (tetraploid) 12.094
CNS0095614Golden flower (tetraploid) 22.356
CNS0095615Golden flower (tetraploid) 31.184
CRA001975CRR073297Stem 15.856
CRR073298Stem 26.096
CRR073299Stem 35.249
CRR073300Leaf 12.694
CRR073301Leaf 24.225
CRR073302Leaf 32.006
CRR073303Juvenile bud 11.531
CRR073304Juvenile bud 21.887
CRR073305Juvenile bud 35.452
CRR073306Third green 10.314
CRR073307Third green 20.421
CRR073308Third green 30.800
CRR073309Second white 11.420
CRR073310Second white 20.846
CRR073311Second white 31.276
CRR073312Silver flowering 13.305
CRR073313Silver flowering 20.203
CRR073314Silver flowering 30.532
CRR073315Gold flowering 10.695
CRR073316Gold flowering 20.830
CRR073317Gold flowering 30.318
CRR073318Tawny withering 10.704
CRR073319Tawny withering 21.547
CRR073320Tawny withering 32.200