Detail information of GWHGAAZE025972


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006356627.15.8627E-146PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like isoform X1 [Solanum tuberosum]
trEMBLtr|M1B5J7|M1B5J7_SOLTU2E-146Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400037559}
TAIR10AT5G25560.25E-111CHY-type/CTCHY-type/RING-type Zinc finger protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7108042871083686-
GWHAAZE00000007mRNA7108042871083686-
GWHAAZE00000007exon7108358471083686-
GWHAAZE00000007exon7108287871083136-
GWHAAZE00000007exon7108270271082789-
GWHAAZE00000007exon7108231471082406-
GWHAAZE00000007exon7108203471082111-
GWHAAZE00000007exon7108191371081956-
GWHAAZE00000007exon7108170071081740-
GWHAAZE00000007exon7108152671081608-
GWHAAZE00000007exon7108133271081423-
GWHAAZE00000007exon7108113471081245-
GWHAAZE00000007exon7108086771081018-
GWHAAZE00000007exon7108042871080530-
GWHAAZE00000007CDS7108358471083686-
GWHAAZE00000007CDS7108287871083136-
GWHAAZE00000007CDS7108270271082789-
GWHAAZE00000007CDS7108231471082406-
GWHAAZE00000007CDS7108203471082111-
GWHAAZE00000007CDS7108191371081956-
GWHAAZE00000007CDS7108170071081740-
GWHAAZE00000007CDS7108152671081608-
GWHAAZE00000007CDS7108133271081423-
GWHAAZE00000007CDS7108113471081245-
GWHAAZE00000007CDS7108086771081018-
GWHAAZE00000007CDS7108048871080530-
GWHAAZE00000007three_prime_UTR7108042871080487-
Transcript Sequence

Network for GWHGAAZE025972

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05495.13zf-CHY1222034.40E-18
PF13639.7zf-RING_22573001.10E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10144RCHY1, PIRH2 Ubiquitin mediated proteolysis map04120
p53 signaling pathwaymap04115

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf45.074
SRR3591706second leaf14.854
SRR3591707mature leaf46.675
SRR3591708Shoot apex22.800
SRR3591709Stem86.562
SRR3591710White floral bud73.674
SRR3591711White flower77.996
SRR3591712Green floral bud62.995
SRR3591713Yellow flower60.820
SRP173429 SRR8316895Juvenile bud stage 25.839
SRR8316896Juvenile bud stage 37.910
SRR8316897Juvenile bud stage 21.738
SRR8316894Third green stage 15.828
SRR8316900Third green stage 46.587
SRR8316901Third green stage 40.400
SRR8316898Complete white stage 12.766
SRR8316899Complete white stage 57.950
SRR8316903Complete white stage 29.616
SRR8316902Silver flowering stage15.628
SRR8316904Silver flowering stage22.206
SRR8316905Silver flowering stage10.057
SRR8316906Gold flowering stage 33.942
SRR8316907Gold flowering stage 29.434
SRR8316908Gold flowering stage 26.650
SRP132670SRR6706286Control25.135
SRR6706287Light intensity 50%30.124
SRR6706288Light intensity 20%31.315
CNP0000432CNS0095592Slightly white alabastrum(diploid) 132.689
CNS0095593Slightly white alabastrum(diploid) 237.186
CNS0095594Slightly white alabastrum(diploid) 322.326
CNS0095595Whole white alabastrum(diploid) 229.446
CNS0095596Whole white alabastrum(diploid) 322.280
CNS0095597Whole white alabastrum(diploid) 426.081
CNS0095598Silvery flower (diploied) 136.127
CNS0095599Silvery flower (diploied) 226.551
CNS0095600Silvery flower (diploied) 331.136
CNS0095601Golden flower (diploid) 129.600
CNS0095602Golden flower (diploid) 231.155
CNS0095603Golden flower (diploid) 328.682
CNS0095604Slightly white alabastrum(tetraploid) 158.765
CNS0095605Slightly white alabastrum(tetraploid) 244.267
CNS0095606Slightly white alabastrum(tetraploid) 370.997
CNS0095607Whole white alabastrum(tetraploid) 142.650
CNS0095608Whole white alabastrum(tetraploid) 234.546
CNS0095609Whole white alabastrum(tetraploid) 356.172
CNS0095610Silvery flower (tetraploid) 196.802
CNS0095611Silvery flower (tetraploid) 283.986
CNS0095612Silvery flower (tetraploid) 374.075
CNS0095613Golden flower (tetraploid) 135.999
CNS0095614Golden flower (tetraploid) 257.993
CNS0095615Golden flower (tetraploid) 332.268
CRA001975CRR073297Stem 136.213
CRR073298Stem 232.430
CRR073299Stem 314.304
CRR073300Leaf 150.507
CRR073301Leaf 248.169
CRR073302Leaf 310.268
CRR073303Juvenile bud 114.519
CRR073304Juvenile bud 25.914
CRR073305Juvenile bud 316.180
CRR073306Third green 12.376
CRR073307Third green 21.349
CRR073308Third green 33.219
CRR073309Second white 11.446
CRR073310Second white 23.637
CRR073311Second white 34.549
CRR073312Silver flowering 13.798
CRR073313Silver flowering 21.859
CRR073314Silver flowering 33.369
CRR073315Gold flowering 11.856
CRR073316Gold flowering 24.263
CRR073317Gold flowering 31.123
CRR073318Tawny withering 119.136
CRR073319Tawny withering 221.287
CRR073320Tawny withering 313.091