Detail information of GWHGAAZE025987


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011081882.10PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Sesamum indicum]
Swissprottr|Q93Z92|RING4_ARATH4E-41E3 ubiquitin-protein ligase At4g11680
trEMBLtr|A0A061GNC5|A0A061GNC5_THECC0RING/U-box superfamily protein {ECO:0000313|EMBL:EOY31365.1}
TAIR10AT4G32600.12E-131RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7134044271347243-
GWHAAZE00000007mRNA7134044271347243-
GWHAAZE00000007exon7134656771347243-
GWHAAZE00000007exon7134369871343823-
GWHAAZE00000007exon7134285371343147-
GWHAAZE00000007exon7134044271341234-
GWHAAZE00000007CDS7134656771347243-
GWHAAZE00000007CDS7134369871343823-
GWHAAZE00000007CDS7134285371343147-
GWHAAZE00000007CDS7134103171341234-
GWHAAZE00000007three_prime_UTR7134044271341030-
Transcript Sequence

Network for GWHGAAZE025987

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_23684091.30E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf35.392
SRR3591706second leaf16.606
SRR3591707mature leaf27.450
SRR3591708Shoot apex24.040
SRR3591709Stem50.978
SRR3591710White floral bud27.094
SRR3591711White flower37.072
SRR3591712Green floral bud26.281
SRR3591713Yellow flower24.192
SRP173429 SRR8316895Juvenile bud stage 26.196
SRR8316896Juvenile bud stage 37.233
SRR8316897Juvenile bud stage 16.488
SRR8316894Third green stage 7.932
SRR8316900Third green stage 20.938
SRR8316901Third green stage 22.715
SRR8316898Complete white stage 9.795
SRR8316899Complete white stage 44.069
SRR8316903Complete white stage 15.580
SRR8316902Silver flowering stage12.998
SRR8316904Silver flowering stage15.258
SRR8316905Silver flowering stage7.641
SRR8316906Gold flowering stage 26.470
SRR8316907Gold flowering stage 22.345
SRR8316908Gold flowering stage 26.383
SRP132670SRR6706286Control19.972
SRR6706287Light intensity 50%19.500
SRR6706288Light intensity 20%20.113
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.099
CNS0095593Slightly white alabastrum(diploid) 229.177
CNS0095594Slightly white alabastrum(diploid) 328.972
CNS0095595Whole white alabastrum(diploid) 223.753
CNS0095596Whole white alabastrum(diploid) 314.699
CNS0095597Whole white alabastrum(diploid) 418.033
CNS0095598Silvery flower (diploied) 132.151
CNS0095599Silvery flower (diploied) 229.528
CNS0095600Silvery flower (diploied) 338.846
CNS0095601Golden flower (diploid) 137.642
CNS0095602Golden flower (diploid) 243.209
CNS0095603Golden flower (diploid) 338.638
CNS0095604Slightly white alabastrum(tetraploid) 115.424
CNS0095605Slightly white alabastrum(tetraploid) 213.834
CNS0095606Slightly white alabastrum(tetraploid) 328.319
CNS0095607Whole white alabastrum(tetraploid) 112.339
CNS0095608Whole white alabastrum(tetraploid) 211.053
CNS0095609Whole white alabastrum(tetraploid) 316.532
CNS0095610Silvery flower (tetraploid) 130.114
CNS0095611Silvery flower (tetraploid) 228.578
CNS0095612Silvery flower (tetraploid) 321.574
CNS0095613Golden flower (tetraploid) 116.874
CNS0095614Golden flower (tetraploid) 222.610
CNS0095615Golden flower (tetraploid) 324.823
CRA001975CRR073297Stem 143.624
CRR073298Stem 234.615
CRR073299Stem 340.247
CRR073300Leaf 141.025
CRR073301Leaf 244.024
CRR073302Leaf 333.957
CRR073303Juvenile bud 136.363
CRR073304Juvenile bud 231.820
CRR073305Juvenile bud 347.176
CRR073306Third green 123.301
CRR073307Third green 222.488
CRR073308Third green 325.580
CRR073309Second white 119.217
CRR073310Second white 222.646
CRR073311Second white 321.662
CRR073312Silver flowering 124.978
CRR073313Silver flowering 219.788
CRR073314Silver flowering 322.208
CRR073315Gold flowering 129.748
CRR073316Gold flowering 240.609
CRR073317Gold flowering 329.345
CRR073318Tawny withering 169.153
CRR073319Tawny withering 262.791
CRR073320Tawny withering 363.746