Detail information of GWHGAAZE025988


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010648552.10PREDICTED: cyclin-A2-2-like [Vitis vinifera]
Swissprottr|Q147G5|CCA22_ARATH5E-155Cyclin-A2-2
trEMBLtr|U5FF50|U5FF50_POPTR0Uncharacterized protein {ECO:0000313|EMBL:ERP49523.1}
TAIR10AT5G11300.11E-122mitotic-like cyclin 3B from Arabidopsis

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7135202571358318-
GWHAAZE00000007mRNA7135202571358318-
GWHAAZE00000007exon7135202571352117-
GWHAAZE00000007exon7135345871353592-
GWHAAZE00000007exon7135370471353853-
GWHAAZE00000007exon7135406271354095-
GWHAAZE00000007exon7135420371354279-
GWHAAZE00000007exon7135488571354960-
GWHAAZE00000007exon7135521471355347-
GWHAAZE00000007exon7135553571355627-
GWHAAZE00000007exon7135595671356089-
GWHAAZE00000007exon7135712671357411-
GWHAAZE00000007exon7135806471358318-
GWHAAZE00000007CDS7135806471358318-
GWHAAZE00000007CDS7135712671357411-
GWHAAZE00000007CDS7135595671356089-
GWHAAZE00000007CDS7135553571355627-
GWHAAZE00000007CDS7135521471355347-
GWHAAZE00000007CDS7135488571354960-
GWHAAZE00000007CDS7135420371354279-
GWHAAZE00000007CDS7135406271354095-
GWHAAZE00000007CDS7135370471353853-
GWHAAZE00000007CDS7135345871353592-
GWHAAZE00000007CDS7135202571352117-
Transcript Sequence

Network for GWHGAAZE025988

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00134.24Cyclin_N2163422.20E-43
PF02984.20Cyclin_C3454675.70E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06627CCNA AMPK signaling pathway map04152
Cell cyclemap04110
Cellular senescencemap04218
Progesterone-mediated oocyte maturationmap04914

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.189
SRR3591706second leaf3.784
SRR3591707mature leaf0.862
SRR3591708Shoot apex43.190
SRR3591709Stem6.580
SRR3591710White floral bud1.260
SRR3591711White flower1.057
SRR3591712Green floral bud1.719
SRR3591713Yellow flower0.193
SRP173429 SRR8316895Juvenile bud stage 5.590
SRR8316896Juvenile bud stage 5.561
SRR8316897Juvenile bud stage 4.551
SRR8316894Third green stage 1.842
SRR8316900Third green stage 2.227
SRR8316901Third green stage 1.447
SRR8316898Complete white stage 0.146
SRR8316899Complete white stage 1.378
SRR8316903Complete white stage 0.314
SRR8316902Silver flowering stage0.207
SRR8316904Silver flowering stage0.204
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.324
SRR8316907Gold flowering stage 0.286
SRR8316908Gold flowering stage 0.454
SRP132670SRR6706286Control1.089
SRR6706287Light intensity 50%1.239
SRR6706288Light intensity 20%2.010
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.530
CNS0095593Slightly white alabastrum(diploid) 23.759
CNS0095594Slightly white alabastrum(diploid) 32.195
CNS0095595Whole white alabastrum(diploid) 20.969
CNS0095596Whole white alabastrum(diploid) 30.756
CNS0095597Whole white alabastrum(diploid) 40.866
CNS0095598Silvery flower (diploied) 12.183
CNS0095599Silvery flower (diploied) 22.378
CNS0095600Silvery flower (diploied) 31.188
CNS0095601Golden flower (diploid) 10.912
CNS0095602Golden flower (diploid) 20.844
CNS0095603Golden flower (diploid) 31.571
CNS0095604Slightly white alabastrum(tetraploid) 13.040
CNS0095605Slightly white alabastrum(tetraploid) 21.828
CNS0095606Slightly white alabastrum(tetraploid) 37.161
CNS0095607Whole white alabastrum(tetraploid) 11.167
CNS0095608Whole white alabastrum(tetraploid) 20.376
CNS0095609Whole white alabastrum(tetraploid) 31.020
CNS0095610Silvery flower (tetraploid) 10.418
CNS0095611Silvery flower (tetraploid) 20.832
CNS0095612Silvery flower (tetraploid) 30.220
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.148
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 15.946
CRR073298Stem 24.675
CRR073299Stem 36.180
CRR073300Leaf 11.116
CRR073301Leaf 21.047
CRR073302Leaf 31.191
CRR073303Juvenile bud 10.659
CRR073304Juvenile bud 20.266
CRR073305Juvenile bud 30.903
CRR073306Third green 10.072
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.048
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.006
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.229
CRR073316Gold flowering 20.749
CRR073317Gold flowering 30.819
CRR073318Tawny withering 19.365
CRR073319Tawny withering 27.675
CRR073320Tawny withering 312.284