Gene detail

Detail information of GWHGAAZE025991

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP32293.1	1.6991E-144	hypothetical protein JCGZ_13218 [Jatropha curcas]
Swissprot	tr\|Q84MB2\|TIF8_ARATH	2E-44	Protein TIFY 8
trEMBL	tr\|A0A067KBC5\|A0A067KBC5_JATCU	6E-145	Uncharacterized protein {ECO:0000313\|EMBL:KDP32293.1}
TAIR10	AT4G32570.1	7E-39	TIFY domain protein 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	71393891	71399218	+
GWHAAZE00000007	mRNA	71393891	71399218	+
GWHAAZE00000007	exon	71393891	71394088	+
GWHAAZE00000007	exon	71395267	71395709	+
GWHAAZE00000007	exon	71396144	71396231	+
GWHAAZE00000007	exon	71397689	71397920	+
GWHAAZE00000007	exon	71399133	71399218	+
GWHAAZE00000007	CDS	71393891	71394088	+
GWHAAZE00000007	CDS	71395267	71395709	+
GWHAAZE00000007	CDS	71396144	71396231	+
GWHAAZE00000007	CDS	71397689	71397920	+
GWHAAZE00000007	CDS	71399133	71399218	+

Transcript Sequence
>GWHTAAZE026025 ATGGTAGAAAGACAGGTAGGGCATCATTTGGAGGGGGTTCCTTACTATGGCCCAAGAAGTGACCTTTCGGGGCCCGAAATTGGTAATAAATTTGCTGGCAGCAAACGAAGTAACTCTGATTCTGCTTTTATTGTTTCGTCAAGAGATAGGTTCCCTCAAATGCGACCAGAGTCACTCGAGAGCTCGCATTTGATGAAGATGATCCGAAGTGCAGGTGGAGATCGACCTAGACGGCCCCAAGAGGAGGAAACAGTCTTTGGTATGCATCAAATGAGGCCAACTTCGGCCTCTCTTATATTACAACCAGCCCCTAGTGGTAGAGCTGATGCCAATGCTTCCAAATGGGATCGAGCTATTCCCATGAATGTTGGCCCTGTCGTACAATATCTGCCTCGTGCAGGTCAAGTTGTACCTTTTGGATATCAAGCACCATCCAACAGATTTAGAGACACAAATGCAGGCCCATCAGTTGTATCTCAAGCAGCTGCTGATGAGGGATCAAGAACTGGAATTAAAGGGTCTGGAATTCTGAGCTCTGTTAATGCCGGCAGTGGAATTGCTGACAGAAACCTACCAAGTGGTGGTGGCAAGCTAAAAACTGGAGCCCGCATTTCCGAGCCAGAATCTTCTACTCCTCCAAGTCGGCCAGGATTAACATCTTCTAGTCGCCAGATGACTATATTTTACGGGGGTCAAGCTCATGTTTTTGATGATGTTCCCCCAAACAAGGCGGACGTTATAATGGCCTTAGCTGGATCAAATGGAGGATCTTGGTCCACAACTTACATGCCAAAATCTGGTGTGAGGTCTCCACCCGGTGAAAATTATGTGCAGAGTCGTGACAATGAAACCAGCATAGCTGGTAACTCTGCTTTACCAAGGGAGTTTCGTGGGAGGTTATCTGTAGCAGGGAATTCCAGTCACGGGTTTGGCTCTGGTGATCGCATCTCAATTCCCCCAGTTCATCAAGGCGGCATTGTAATGAAAGATGTGAGAGGCCTAACTCAACTAGCCGAACCTGCGGCCGAAGAGAAACGAGAGGTATAA

Network for GWHGAAZE025991

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06200.15	tify	220	252	5.60E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Tify

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.005
	SRR3591706	second leaf	54.793
	SRR3591707	mature leaf	50.776
	SRR3591708	Shoot apex	77.946
	SRR3591709	Stem	74.582
	SRR3591710	White floral bud	11.829
	SRR3591711	White flower	14.552
	SRR3591712	Green floral bud	32.262
	SRR3591713	Yellow flower	6.494
SRP173429	SRR8316895	Juvenile bud stage	19.618
	SRR8316896	Juvenile bud stage	24.503
	SRR8316897	Juvenile bud stage	13.376
	SRR8316894	Third green stage	11.521
	SRR8316900	Third green stage	35.167
	SRR8316901	Third green stage	35.297
	SRR8316898	Complete white stage	7.554
	SRR8316899	Complete white stage	48.421
	SRR8316903	Complete white stage	9.032
	SRR8316902	Silver flowering stage	5.260
	SRR8316904	Silver flowering stage	4.321
	SRR8316905	Silver flowering stage	2.283
	SRR8316906	Gold flowering stage	6.812
	SRR8316907	Gold flowering stage	7.094
	SRR8316908	Gold flowering stage	10.324
SRP132670	SRR6706286	Control	34.928
	SRR6706287	Light intensity 50%	36.295
	SRR6706288	Light intensity 20%	43.121
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.918
	CNS0095593	Slightly white alabastrum(diploid) 2	47.318
	CNS0095594	Slightly white alabastrum(diploid) 3	27.594
	CNS0095595	Whole white alabastrum(diploid) 2	32.208
	CNS0095596	Whole white alabastrum(diploid) 3	31.102
	CNS0095597	Whole white alabastrum(diploid) 4	30.362
	CNS0095598	Silvery flower (diploied) 1	48.815
	CNS0095599	Silvery flower (diploied) 2	38.371
	CNS0095600	Silvery flower (diploied) 3	21.441
	CNS0095601	Golden flower (diploid) 1	35.836
	CNS0095602	Golden flower (diploid) 2	25.323
	CNS0095603	Golden flower (diploid) 3	24.336
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.175
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.481
	CNS0095606	Slightly white alabastrum(tetraploid) 3	49.053
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.746
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.530
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.363
	CNS0095610	Silvery flower (tetraploid) 1	18.621
	CNS0095611	Silvery flower (tetraploid) 2	24.186
	CNS0095612	Silvery flower (tetraploid) 3	6.813
	CNS0095613	Golden flower (tetraploid) 1	8.737
	CNS0095614	Golden flower (tetraploid) 2	15.930
	CNS0095615	Golden flower (tetraploid) 3	2.745
CRA001975	CRR073297	Stem 1	33.634
	CRR073298	Stem 2	31.337
	CRR073299	Stem 3	32.723
	CRR073300	Leaf 1	39.987
	CRR073301	Leaf 2	43.633
	CRR073302	Leaf 3	34.398
	CRR073303	Juvenile bud 1	32.087
	CRR073304	Juvenile bud 2	22.552
	CRR073305	Juvenile bud 3	34.132
	CRR073306	Third green 1	1.935
	CRR073307	Third green 2	1.060
	CRR073308	Third green 3	1.326
	CRR073309	Second white 1	1.096
	CRR073310	Second white 2	0.560
	CRR073311	Second white 3	0.560
	CRR073312	Silver flowering 1	0.214
	CRR073313	Silver flowering 2	0.447
	CRR073314	Silver flowering 3	0.207
	CRR073315	Gold flowering 1	26.275
	CRR073316	Gold flowering 2	29.819
	CRR073317	Gold flowering 3	20.478
	CRR073318	Tawny withering 1	55.892
	CRR073319	Tawny withering 2	42.452
	CRR073320	Tawny withering 3	53.851