Detail information of GWHGAAZE025993


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011019743.10PREDICTED: transcriptional corepressor LEUNIG isoform X2 [Populus euphratica]
COGYP_001864889.11E-30hypothetical protein Npun_F1222
Swissprottr|Q9FUY2|LEUNG_ARATH0Transcriptional corepressor LEUNIG
trEMBLtr|W9SY16|W9SY16_9ROSA0Transcriptional corepressor LEUNIG {ECO:0000313|EMBL:EXC32583.1}
TAIR10AT4G32551.10LisH dimerisation motif;WD40/YVTN repeat-like-containing domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7143229171443245-
GWHAAZE00000007mRNA7143229171443245-
GWHAAZE00000007exon7144321471443245-
GWHAAZE00000007exon7144256971442666-
GWHAAZE00000007exon7144234271442455-
GWHAAZE00000007exon7144067271440835-
GWHAAZE00000007exon7144050071440588-
GWHAAZE00000007exon7144014271440220-
GWHAAZE00000007exon7143978871439863-
GWHAAZE00000007exon7143952871439580-
GWHAAZE00000007exon7143839171438702-
GWHAAZE00000007exon7143750271437636-
GWHAAZE00000007exon7143687971437124-
GWHAAZE00000007exon7143664971436790-
GWHAAZE00000007exon7143600171436110-
GWHAAZE00000007exon7143570971435858-
GWHAAZE00000007exon7143496271435117-
GWHAAZE00000007exon7143474471434860-
GWHAAZE00000007exon7143407571434155-
GWHAAZE00000007exon7143229171432434-
GWHAAZE00000007CDS7144321471443245-
GWHAAZE00000007CDS7144256971442666-
GWHAAZE00000007CDS7144234271442455-
GWHAAZE00000007CDS7144067271440835-
GWHAAZE00000007CDS7144050071440588-
GWHAAZE00000007CDS7144014271440220-
GWHAAZE00000007CDS7143978871439863-
GWHAAZE00000007CDS7143952871439580-
GWHAAZE00000007CDS7143839171438702-
GWHAAZE00000007CDS7143750271437636-
GWHAAZE00000007CDS7143687971437124-
GWHAAZE00000007CDS7143664971436790-
GWHAAZE00000007CDS7143600171436110-
GWHAAZE00000007CDS7143570971435858-
GWHAAZE00000007CDS7143496271435117-
GWHAAZE00000007CDS7143474471434860-
GWHAAZE00000007CDS7143407571434155-
GWHAAZE00000007CDS7143229171432434-
Transcript Sequence

Network for GWHGAAZE025993

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08513.12LisH10361.10E-06
PF00400.33WD405255540.0085
PF00400.33WD405605973.50E-06
PF00400.33WD406046418.50E-05
PF00400.33WD406867155.50E-05
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLUG
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf42.339
SRR3591706second leaf25.117
SRR3591707mature leaf17.640
SRR3591708Shoot apex46.622
SRR3591709Stem27.316
SRR3591710White floral bud29.970
SRR3591711White flower25.557
SRR3591712Green floral bud37.690
SRR3591713Yellow flower13.994
SRP173429 SRR8316895Juvenile bud stage 23.413
SRR8316896Juvenile bud stage 30.455
SRR8316897Juvenile bud stage 15.850
SRR8316894Third green stage 15.074
SRR8316900Third green stage 38.873
SRR8316901Third green stage 37.574
SRR8316898Complete white stage 16.758
SRR8316899Complete white stage 50.004
SRR8316903Complete white stage 30.275
SRR8316902Silver flowering stage8.695
SRR8316904Silver flowering stage14.041
SRR8316905Silver flowering stage6.263
SRR8316906Gold flowering stage 16.703
SRR8316907Gold flowering stage 15.467
SRR8316908Gold flowering stage 16.619
SRP132670SRR6706286Control42.529
SRR6706287Light intensity 50%45.702
SRR6706288Light intensity 20%48.429
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.310
CNS0095593Slightly white alabastrum(diploid) 226.277
CNS0095594Slightly white alabastrum(diploid) 324.363
CNS0095595Whole white alabastrum(diploid) 219.952
CNS0095596Whole white alabastrum(diploid) 319.497
CNS0095597Whole white alabastrum(diploid) 421.902
CNS0095598Silvery flower (diploied) 124.772
CNS0095599Silvery flower (diploied) 220.829
CNS0095600Silvery flower (diploied) 325.224
CNS0095601Golden flower (diploid) 121.063
CNS0095602Golden flower (diploid) 223.810
CNS0095603Golden flower (diploid) 324.413
CNS0095604Slightly white alabastrum(tetraploid) 142.559
CNS0095605Slightly white alabastrum(tetraploid) 237.520
CNS0095606Slightly white alabastrum(tetraploid) 361.250
CNS0095607Whole white alabastrum(tetraploid) 131.173
CNS0095608Whole white alabastrum(tetraploid) 229.332
CNS0095609Whole white alabastrum(tetraploid) 347.406
CNS0095610Silvery flower (tetraploid) 131.015
CNS0095611Silvery flower (tetraploid) 228.823
CNS0095612Silvery flower (tetraploid) 329.525
CNS0095613Golden flower (tetraploid) 116.093
CNS0095614Golden flower (tetraploid) 222.513
CNS0095615Golden flower (tetraploid) 319.737
CRA001975CRR073297Stem 137.003
CRR073298Stem 234.172
CRR073299Stem 336.604
CRR073300Leaf 142.693
CRR073301Leaf 240.047
CRR073302Leaf 332.013
CRR073303Juvenile bud 140.923
CRR073304Juvenile bud 229.256
CRR073305Juvenile bud 355.056
CRR073306Third green 110.261
CRR073307Third green 29.930
CRR073308Third green 311.500
CRR073309Second white 17.308
CRR073310Second white 29.905
CRR073311Second white 311.294
CRR073312Silver flowering 19.870
CRR073313Silver flowering 29.354
CRR073314Silver flowering 39.300
CRR073315Gold flowering 115.029
CRR073316Gold flowering 220.038
CRR073317Gold flowering 312.660
CRR073318Tawny withering 121.505
CRR073319Tawny withering 213.374
CRR073320Tawny withering 319.563