Gene detail

Detail information of GWHGAAZE025995

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284801.1	0	PREDICTED: probable protein phosphatase 2C 22 [Vitis vinifera]
COG	YP_003709340.1	2E-23	serine/threonine PP2C protein phosphatase
Swissprot	tr\|Q9SLA1\|P2C22_ARATH	0	Probable protein phosphatase 2C 22
trEMBL	tr\|D7SUM8\|D7SUM8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI20977.3}
TAIR10	AT2G25620.1	4E-139	DNA-binding protein phosphatase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	71541673	71546863	+
GWHAAZE00000007	mRNA	71541673	71546863	+
GWHAAZE00000007	exon	71541673	71541879	+
GWHAAZE00000007	exon	71544682	71544893	+
GWHAAZE00000007	exon	71546299	71546863	+
GWHAAZE00000007	CDS	71541673	71541879	+
GWHAAZE00000007	CDS	71544682	71544893	+
GWHAAZE00000007	CDS	71546299	71546863	+

Transcript Sequence
>GWHTAAZE026029 GTGAAGACGAAGGCATCAGATATTTCTGTAGAACCAATACTAAGTGTTGAAGATTTTGAGACTGAGTTCATACCTATTCTTCGCTCAGGAGCATGGACAGATATTGGGTTTCGCTCAAGCATGGAGGATGTGTATGTTTGTGCTGATAATTTTACGCACGACTATGGGGTCAAGAATCTGGATGAAGGACCCAGCGCCTTCTATGGGGTTTTCGATGGTCATGGTGGAAAGCATGCAGCTGATTTTGTATGTCATCATTTGCCAAGGTTCATTGTAAAAGATGAAGAGTTCCCTAAGGAGATTGAGAGGGTAATTTCTTCAGCATTTCTTCAAACCGACAATGCTTTCGCTGAAGCTTGTTCTTTGGATGCTGCACTTGCTTCTGGTACCACTGCATTGGCAGCTCTTGTTATTGGGAGCTCACTGGTGGTCGCAAATGCCGGAGATTGTCGCGCTGTTCTATGCCGCCGAGGCAAAGCAGTGGAGATGTCAAGGGACCATAAACCGATTTGCACCAAAGAAAGAAAGCGCATCGAAGCCTTGGGCGGATATGTAGACGACGGTTACCTCAATGGTCAACTCAATGTGGCTCGAGCTTTAGGAGACTGGCACATGGAAGGCCTAAAGGGCCACCACGGTGGGCCCCTTAGTTCTGAGCCGGAACTTATGACCACAAAACTAACAAAAGAGGATGAGTTCCTTATCATTGGTTGTGATGGTATTTGGGATGTTTTTTTGAGCCAAAACGCTGTTGATTTTGCTAGGCGTAAGCTTCAAGAACACAACGACCCTGTTTTGTGTAGCAAGGACTTGGTGGACGAGGCTTTGAAGAGGAAGAGCAGTGACAATTTGGCGGCGGTGGTGGTTTGCTTTCAGCCTCAACCGCCGCCTAATTTGGTGGCTCCACGGGGGAGAGTGCAGCGGAGTATTTCGGCTGAGGGCTTGAAGGAGTTGCAGAGCTTTTTGGATAGCTTGGCGGATTGA

Network for GWHGAAZE025995

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.22	PP2C	36	283	5.10E-70

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	DBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0043169	molecular_function	cation binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.438
	SRR3591706	second leaf	14.813
	SRR3591707	mature leaf	6.415
	SRR3591708	Shoot apex	19.068
	SRR3591709	Stem	10.355
	SRR3591710	White floral bud	9.491
	SRR3591711	White flower	13.219
	SRR3591712	Green floral bud	16.736
	SRR3591713	Yellow flower	7.861
SRP173429	SRR8316895	Juvenile bud stage	13.938
	SRR8316896	Juvenile bud stage	17.977
	SRR8316897	Juvenile bud stage	8.064
	SRR8316894	Third green stage	6.650
	SRR8316900	Third green stage	20.171
	SRR8316901	Third green stage	18.098
	SRR8316898	Complete white stage	6.197
	SRR8316899	Complete white stage	17.788
	SRR8316903	Complete white stage	6.427
	SRR8316902	Silver flowering stage	7.466
	SRR8316904	Silver flowering stage	9.618
	SRR8316905	Silver flowering stage	4.451
	SRR8316906	Gold flowering stage	11.426
	SRR8316907	Gold flowering stage	12.413
	SRR8316908	Gold flowering stage	9.623
SRP132670	SRR6706286	Control	12.595
	SRR6706287	Light intensity 50%	12.023
	SRR6706288	Light intensity 20%	13.755
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.963
	CNS0095593	Slightly white alabastrum(diploid) 2	14.468
	CNS0095594	Slightly white alabastrum(diploid) 3	11.240
	CNS0095595	Whole white alabastrum(diploid) 2	10.291
	CNS0095596	Whole white alabastrum(diploid) 3	10.860
	CNS0095597	Whole white alabastrum(diploid) 4	8.341
	CNS0095598	Silvery flower (diploied) 1	12.206
	CNS0095599	Silvery flower (diploied) 2	15.188
	CNS0095600	Silvery flower (diploied) 3	11.971
	CNS0095601	Golden flower (diploid) 1	7.997
	CNS0095602	Golden flower (diploid) 2	9.517
	CNS0095603	Golden flower (diploid) 3	9.968
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.160
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.345
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.365
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.920
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.427
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.778
	CNS0095610	Silvery flower (tetraploid) 1	7.944
	CNS0095611	Silvery flower (tetraploid) 2	9.294
	CNS0095612	Silvery flower (tetraploid) 3	3.960
	CNS0095613	Golden flower (tetraploid) 1	2.933
	CNS0095614	Golden flower (tetraploid) 2	7.104
	CNS0095615	Golden flower (tetraploid) 3	2.271
CRA001975	CRR073297	Stem 1	22.676
	CRR073298	Stem 2	17.982
	CRR073299	Stem 3	23.790
	CRR073300	Leaf 1	19.573
	CRR073301	Leaf 2	20.237
	CRR073302	Leaf 3	20.698
	CRR073303	Juvenile bud 1	21.584
	CRR073304	Juvenile bud 2	14.046
	CRR073305	Juvenile bud 3	17.262
	CRR073306	Third green 1	5.198
	CRR073307	Third green 2	4.241
	CRR073308	Third green 3	5.895
	CRR073309	Second white 1	4.919
	CRR073310	Second white 2	3.368
	CRR073311	Second white 3	3.508
	CRR073312	Silver flowering 1	4.638
	CRR073313	Silver flowering 2	4.187
	CRR073314	Silver flowering 3	6.414
	CRR073315	Gold flowering 1	11.083
	CRR073316	Gold flowering 2	8.634
	CRR073317	Gold flowering 3	10.545
	CRR073318	Tawny withering 1	21.755
	CRR073319	Tawny withering 2	19.091
	CRR073320	Tawny withering 3	19.278