Gene detail

Detail information of GWHGAAZE026002

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002514364.1	1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
COG	YP_001412061.1	1-deoxy-D-xylulose-5-phosphate synthase
Swissprot	tr\|O22567\|DXS1_ORYSJ	1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic (Precursor)
trEMBL	tr\|B9RK10\|B9RK10_RICCO	1-deoxyxylulose-5-phosphate synthase, putative {ECO:0000313\|EMBL:EEF48318.1}
TAIR10	AT5G11380.1	1-deoxy-D-xylulose 5-phosphate synthase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	71664598	71675256	+
GWHAAZE00000007	mRNA	71664598	71675256	+
GWHAAZE00000007	exon	71664598	71664845	+
GWHAAZE00000007	exon	71667095	71667214	+
GWHAAZE00000007	exon	71667292	71667456	+
GWHAAZE00000007	exon	71667682	71667832	+
GWHAAZE00000007	exon	71668545	71668813	+
GWHAAZE00000007	exon	71670204	71670486	+
GWHAAZE00000007	exon	71670746	71671038	+
GWHAAZE00000007	exon	71672596	71672874	+
GWHAAZE00000007	exon	71673403	71673687	+
GWHAAZE00000007	exon	71675107	71675256	+
GWHAAZE00000007	five_prime_UTR	71664598	71664692	+
GWHAAZE00000007	CDS	71664693	71664845	+
GWHAAZE00000007	CDS	71667095	71667214	+
GWHAAZE00000007	CDS	71667292	71667456	+
GWHAAZE00000007	CDS	71667682	71667832	+
GWHAAZE00000007	CDS	71668545	71668813	+
GWHAAZE00000007	CDS	71670204	71670486	+
GWHAAZE00000007	CDS	71670746	71671038	+
GWHAAZE00000007	CDS	71672596	71672874	+
GWHAAZE00000007	CDS	71673403	71673687	+
GWHAAZE00000007	CDS	71675107	71675256	+

Transcript Sequence
>GWHTAAZE026036 GGTTTTGGTTTTCCAATTGAAGCCCCCCTCTAATGCATCTTCAACTTTCTCTCAATTGAATTACATTTTGCTGATCTGGGTTTTTGTTTCTACTAATGGGTACTGCTTCTCCTCAGTACTCATTTGGCATCTCTCCCCATTTCCAGGGAAATTCAGCCCAAATCTCTCCCAAATTGGATTCTTTAAGTGTTCATTTTCCTCTCAGAGGGGAAATTTTCGGAAGTACTACTTCCTCTTGTACATCCAAGGGATGTGTGGGTCGGATATATTCGCTACCTAATTTTGATGAATTCTCTTGGGAGAAGGTTCCAACACCCATACTTGATACCATTGAAAACCCTATGCACTTGAAGAACTTGTCTCCAAAGGAACTAAAACAATTAGCTGATGACATCCGGTCAGAGTTATCCTTTATAATGTTGAAAACTCAAAAACCCTTAAAAGCAAGTCTTGCGACGGTGGAACTGACTATTGCACTGCACTATGTTTTTCATGCTCCAATGGACAAGATATTGTGGGATGTGGGTGCACAGACTTATGCTCATAAGATTCTAACAGGAAGGAGATCCCTCATGCATACACTTAGAGAAAAAGATGGTGTTTCGGGTAACACTTCTCGTTTTGAGAGTGAGTTTGACCCATTTGGTTCAGCTCATGGATGCAACAGCGTTTCTGCTGGACTCGGATTAGCTGTTGCACGAGATATTAAAGCGAAACGAGATCGCGTAGTTACAGTCATCAGCAATGGAACAACTATGGCTGGTCAGCTTTATGAGGCAATGAGCAATGCAGGTTATTTGGATTCGGATATGATTGTGATATTAAATGATAGCCGACACTCCTTACACCCAAAGATCCACGGTACCCCCAATGAACAAATCAATGCTCTATCTAGTACTCTTATCAAGCTACAGTCGAGTAAATTTTTCCGCAGGTTTAGAGAGGCTCTCAAGGGTTTAACCAAGAGAATTGGTAGGGGTATGTATGAATGGGCGGCAAAAGTTGACGAGTATGCCCGTGGTATGATAGGTCCACCGGGATCAACTCTTTTTGAAGAACTTGGGTTGTATTACATTGGCCCTGTCGATGGACACAACATTGAAGACCTTATATGTGTTCTCCATGAAGTTGCATCCTTGGATTCTACGGGTCCCGTTTTGGTTCATGTGATAACCAAGGAAGATCAAGAACCACAAAATCTCCAACAGAGTGATATATCAAACAAACAAGAGGAAGGTTCTTCTAAGTCTGATTCATTCTCCTCTAGTGGTAGCCAACAAACGTATGGTGACCGCTTTGTGGAGGCTTTAATAATGGAGGCGGAGAGAGATAAAGATATTGTGGCAGTTCATGCTGGAATGGGAATGGAGAAATCACTTCATTTATTTCGGGAAAAATTTCCAGACAGGTTTTTTGAAGTGGGGATGGCTGAGCAGCATGCTGTCACATTTTCTGCTGGTTTGGCATGCGGGGGATTGAAGCCTTTCTGTATTATTCCATCTGCTTTTCTTCAGAGAGCTTATGATCAGGTAGTACATGACGTAGATCGGCAGAAGATTCCAGTGCGTTTTGTTATCACAAGTGCAGGATTGGTAGGGTCCGACGGCCCCGCTCAGTGTGGAGCATTTGATGTAGCATTCATGTCATGCTTGCCAAACATGATCGTAATGGCACCATCCGATGAGGTTGAGCTTGTTAACATGGTTGCCACCGCATCACAAATTGATGACAGGCCTGTTTGCTTCCGTTATCCTAGAGGTGCCCTTGTGCAGATGAATGACTCTATGTGTACCGGAATGCCTATCGAGATTGGTAAAGGAAGAGTTATTGTAGATGGGAAAGATATTGCTTTGCTTGGCTATGGAGCTATGGTTCAAAATTGTCTTAGAGCTCAGTCCTTGCTCTCAAAGCTCGGCATTGAGGTCACAGTTGCCGATGCACGTTTCTGCAAGCCACTCGACATAAATCTTGTTAGGCAGTTATGCGAGAACCACTCATTTCTTATCACCGTCGAGGAAGGCTCAGTTGGGGGCTTCGGATCACATGTTGCGCAATTCATTACGCTTGATGGGCAGCTTGATGGAAAAGTAAAGTGGCGGCCGATTGTCTTGCCAGACCACTACATTGAGCATGCATCGCCGGAGGAACAGCTTGCACTGGCCGGCTTGACTGGACACCACATTGCTGCTACAGCACTGAGCCTGCTTGGCCGGGCCCGTGAAGCCCTTCTGTTGATGTGCTGA

Network for GWHGAAZE026002

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13292.7	DXP_synthase_N	76	360	6.90E-83
PF02779.25	Transket_pyr	396	557	1.90E-31
PF02780.21	Transketolase_C	573	696	2.10E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01662	dxs	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Thiamine metabolism	map00730
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0016114	biological_process	terpenoid biosynthetic process
GO:0008661	molecular_function	1-deoxy-D-xylulose-5-phosphate synthase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.784
	SRR3591706	second leaf	16.082
	SRR3591707	mature leaf	14.278
	SRR3591708	Shoot apex	21.085
	SRR3591709	Stem	17.320
	SRR3591710	White floral bud	12.456
	SRR3591711	White flower	12.881
	SRR3591712	Green floral bud	14.095
	SRR3591713	Yellow flower	12.900
SRP173429	SRR8316895	Juvenile bud stage	14.251
	SRR8316896	Juvenile bud stage	17.299
	SRR8316897	Juvenile bud stage	11.890
	SRR8316894	Third green stage	5.154
	SRR8316900	Third green stage	15.670
	SRR8316901	Third green stage	13.633
	SRR8316898	Complete white stage	3.258
	SRR8316899	Complete white stage	18.761
	SRR8316903	Complete white stage	6.822
	SRR8316902	Silver flowering stage	3.131
	SRR8316904	Silver flowering stage	3.958
	SRR8316905	Silver flowering stage	1.709
	SRR8316906	Gold flowering stage	5.494
	SRR8316907	Gold flowering stage	5.276
	SRR8316908	Gold flowering stage	7.124
SRP132670	SRR6706286	Control	11.629
	SRR6706287	Light intensity 50%	10.849
	SRR6706288	Light intensity 20%	12.352
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.566
	CNS0095593	Slightly white alabastrum(diploid) 2	18.251
	CNS0095594	Slightly white alabastrum(diploid) 3	18.928
	CNS0095595	Whole white alabastrum(diploid) 2	16.500
	CNS0095596	Whole white alabastrum(diploid) 3	12.116
	CNS0095597	Whole white alabastrum(diploid) 4	12.711
	CNS0095598	Silvery flower (diploied) 1	12.196
	CNS0095599	Silvery flower (diploied) 2	12.649
	CNS0095600	Silvery flower (diploied) 3	15.646
	CNS0095601	Golden flower (diploid) 1	14.269
	CNS0095602	Golden flower (diploid) 2	17.184
	CNS0095603	Golden flower (diploid) 3	17.524
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.202
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.810
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.165
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.645
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.620
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.514
	CNS0095610	Silvery flower (tetraploid) 1	13.469
	CNS0095611	Silvery flower (tetraploid) 2	14.283
	CNS0095612	Silvery flower (tetraploid) 3	14.640
	CNS0095613	Golden flower (tetraploid) 1	7.133
	CNS0095614	Golden flower (tetraploid) 2	11.242
	CNS0095615	Golden flower (tetraploid) 3	9.125
CRA001975	CRR073297	Stem 1	19.044
	CRR073298	Stem 2	16.857
	CRR073299	Stem 3	14.603
	CRR073300	Leaf 1	18.447
	CRR073301	Leaf 2	17.489
	CRR073302	Leaf 3	14.300
	CRR073303	Juvenile bud 1	16.487
	CRR073304	Juvenile bud 2	8.951
	CRR073305	Juvenile bud 3	15.619
	CRR073306	Third green 1	3.848
	CRR073307	Third green 2	2.900
	CRR073308	Third green 3	4.150
	CRR073309	Second white 1	6.166
	CRR073310	Second white 2	4.921
	CRR073311	Second white 3	5.097
	CRR073312	Silver flowering 1	7.607
	CRR073313	Silver flowering 2	4.944
	CRR073314	Silver flowering 3	6.002
	CRR073315	Gold flowering 1	15.064
	CRR073316	Gold flowering 2	17.894
	CRR073317	Gold flowering 3	13.322
	CRR073318	Tawny withering 1	15.131
	CRR073319	Tawny withering 2	12.282
	CRR073320	Tawny withering 3	17.069