Gene detail

Detail information of GWHGAAZE026006

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDY05350.1	2.12768E-71	BnaC02g40580D [Brassica napus]
Swissprot	tr\|F4JWS8\|QCR72_ARATH	1E-71	Cytochrome b-c1 complex subunit 7-2
trEMBL	tr\|A0A078ETI8\|A0A078ETI8_BRANA	8E-72	Cytochrome b-c1 complex subunit 7 {ECO:0000256\|PIRNR:PIRNR000022}
TAIR10	AT5G25450.1	6E-38	Cytochrome bd ubiquinol oxidase, 14kDa subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	71726790	71730965	+
GWHAAZE00000007	mRNA	71726790	71730965	+
GWHAAZE00000007	exon	71726790	71726886	+
GWHAAZE00000007	exon	71727010	71727167	+
GWHAAZE00000007	exon	71728482	71728529	+
GWHAAZE00000007	exon	71730263	71730965	+
GWHAAZE00000007	CDS	71726790	71726886	+
GWHAAZE00000007	CDS	71727010	71727167	+
GWHAAZE00000007	CDS	71728482	71728529	+
GWHAAZE00000007	CDS	71730263	71730331	+
GWHAAZE00000007	three_prime_UTR	71730332	71730965	+

Transcript Sequence
>GWHTAAZE026040 ATGGCATCGGCACTAATGCGATGGATGGTAGATCCAAGGAAGAACTGGCTCGCAAATATCCACAAGAAAACCATCTCCAATCGTCTCCGCAGATACGGTCTTCGTTATGACGATCTGTATGATCCTATGTACGATTTGGACATAAAGGAAGCCCTAAATCGGCTCCCTAGAGAGATTGTGGACGCTAGAAATCAGCGACTTAAGCGCGCCATGGACCTCTCTATGAAGCACGAATACCTCCCTGAGGATCTCCAGGCAATGCAGACACCATTTAGAAGCTATCTTCAAGATATGTTGGCCCTTGTAAAGAGAGAGAGGGAAGAACGTGAAGCTTTAGGAGCTTTGCCTCTGTATCAGCGAACCATTCCCTGAGCCATTTTACAGTAACAACAGAAGTACCTTTTGTTGAATAAAAGAAAAAAAAAATGGGGGTGTATATTTTATGATAAGAGTTTTGTGGCCATATTAATCGTTACTAGTAGCTTTAGCTTTGATCTCTACTTGTATTCTTACTGCTCCGGGTTATGCTACTACAGCTACATCAACCTCTTTGTTTGTGATTTTATCAGTGGGTTGGACAGTGTAAGCGCGTCTTTTTCTAGGAATTCATAAACATATTTTCAACCTTTTTGTGCGGGTAGGGCTGCAAATAAAGTGCAGTTGGCTAGTTTGAGCTCGATCCATGTATAAAGATTGGTTTGTTAAATGTGGTGAGCTTGAACGGAACTAGTTCAGCTCGAGTAGGCTCCTGGAAATGGCTCAAACAAATTCACAAATTTTGTTTTTGTGAGTTGAGCTCGAGAGAAGATCAAACGAAGCAAAATTTACTGAGTTTGAACGTGGGTTCTTTGAGCTCGTCAAAGTCCTGCTCGAGCATGATTATTTTAACCACTTGAAAGCTAGGCTTCGCAAGCGTTGACTTGTTTACTTTAGGTAAATGATTTTTTTCTTGCTATTATGGGATGAAATTTGTTTAATTTATACACCCTACGTTCTAAGTTAAAGA

Network for GWHGAAZE026006

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02271.17	UCR_14kD	9	110	1.90E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00417	QCR7, UQCRB	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Cardiac muscle contraction	map04260
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006122	biological_process	mitochondrial electron transport, ubiquinol to cytochrome c
GO:0005750	cellular_component	mitochondrial respiratory chain complex III

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.926
	SRR3591706	second leaf	8.073
	SRR3591707	mature leaf	10.307
	SRR3591708	Shoot apex	14.078
	SRR3591709	Stem	15.460
	SRR3591710	White floral bud	9.534
	SRR3591711	White flower	18.456
	SRR3591712	Green floral bud	12.770
	SRR3591713	Yellow flower	17.944
SRP173429	SRR8316895	Juvenile bud stage	13.105
	SRR8316896	Juvenile bud stage	20.872
	SRR8316897	Juvenile bud stage	11.176
	SRR8316894	Third green stage	8.458
	SRR8316900	Third green stage	24.250
	SRR8316901	Third green stage	18.157
	SRR8316898	Complete white stage	4.384
	SRR8316899	Complete white stage	29.354
	SRR8316903	Complete white stage	7.484
	SRR8316902	Silver flowering stage	7.066
	SRR8316904	Silver flowering stage	7.588
	SRR8316905	Silver flowering stage	4.052
	SRR8316906	Gold flowering stage	21.444
	SRR8316907	Gold flowering stage	23.221
	SRR8316908	Gold flowering stage	21.577
SRP132670	SRR6706286	Control	32.671
	SRR6706287	Light intensity 50%	27.657
	SRR6706288	Light intensity 20%	29.817
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.436
	CNS0095593	Slightly white alabastrum(diploid) 2	30.528
	CNS0095594	Slightly white alabastrum(diploid) 3	36.938
	CNS0095595	Whole white alabastrum(diploid) 2	26.032
	CNS0095596	Whole white alabastrum(diploid) 3	22.029
	CNS0095597	Whole white alabastrum(diploid) 4	18.548
	CNS0095598	Silvery flower (diploied) 1	30.035
	CNS0095599	Silvery flower (diploied) 2	29.598
	CNS0095600	Silvery flower (diploied) 3	23.013
	CNS0095601	Golden flower (diploid) 1	44.911
	CNS0095602	Golden flower (diploid) 2	31.110
	CNS0095603	Golden flower (diploid) 3	32.517
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.595
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.325
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.027
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.923
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.835
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.757
	CNS0095610	Silvery flower (tetraploid) 1	22.792
	CNS0095611	Silvery flower (tetraploid) 2	33.372
	CNS0095612	Silvery flower (tetraploid) 3	24.618
	CNS0095613	Golden flower (tetraploid) 1	33.526
	CNS0095614	Golden flower (tetraploid) 2	27.504
	CNS0095615	Golden flower (tetraploid) 3	16.806
CRA001975	CRR073297	Stem 1	25.366
	CRR073298	Stem 2	26.980
	CRR073299	Stem 3	28.223
	CRR073300	Leaf 1	20.490
	CRR073301	Leaf 2	25.197
	CRR073302	Leaf 3	34.157
	CRR073303	Juvenile bud 1	25.075
	CRR073304	Juvenile bud 2	12.404
	CRR073305	Juvenile bud 3	23.950
	CRR073306	Third green 1	8.607
	CRR073307	Third green 2	9.727
	CRR073308	Third green 3	8.670
	CRR073309	Second white 1	19.865
	CRR073310	Second white 2	18.106
	CRR073311	Second white 3	12.118
	CRR073312	Silver flowering 1	14.768
	CRR073313	Silver flowering 2	21.931
	CRR073314	Silver flowering 3	10.557
	CRR073315	Gold flowering 1	38.590
	CRR073316	Gold flowering 2	31.270
	CRR073317	Gold flowering 3	35.897
	CRR073318	Tawny withering 1	42.466
	CRR073319	Tawny withering 2	41.317
	CRR073320	Tawny withering 3	32.138