Detail information of GWHGAAZE026036


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002324295.10SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
Swissprottr|Q9SG02|RDR6_ARATH0RNA-dependent RNA polymerase 6
trEMBLtr|B9IKW9|B9IKW9_POPTR0SILENCING DEFECTIVE 1 family protein {ECO:0000313|EMBL:EEF02860.1}
TAIR10AT3G49500.10RNA-dependent RNA polymerase 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7217329372181520+
GWHAAZE00000007mRNA7217329372181520+
GWHAAZE00000007exon7217329372176007+
GWHAAZE00000007exon7218064572181520+
GWHAAZE00000007CDS7217329372176007+
GWHAAZE00000007CDS7218064572181520+
Transcript Sequence

Network for GWHGAAZE026036

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0084


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05183.13RdRP4179991.50E-186
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003968molecular_functionRNA-directed 5'-3' RNA polymerase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.867
SRR3591706second leaf1.872
SRR3591707mature leaf0.732
SRR3591708Shoot apex1.920
SRR3591709Stem4.680
SRR3591710White floral bud2.843
SRR3591711White flower1.362
SRR3591712Green floral bud3.962
SRR3591713Yellow flower0.101
SRP173429 SRR8316895Juvenile bud stage 0.869
SRR8316896Juvenile bud stage 0.847
SRR8316897Juvenile bud stage 0.427
SRR8316894Third green stage 0.364
SRR8316900Third green stage 1.086
SRR8316901Third green stage 0.791
SRR8316898Complete white stage 0.054
SRR8316899Complete white stage 1.686
SRR8316903Complete white stage 0.238
SRR8316902Silver flowering stage0.044
SRR8316904Silver flowering stage0.009
SRR8316905Silver flowering stage0.030
SRR8316906Gold flowering stage 0.063
SRR8316907Gold flowering stage 0.071
SRR8316908Gold flowering stage 0.042
SRP132670SRR6706286Control1.043
SRR6706287Light intensity 50%0.952
SRR6706288Light intensity 20%0.822
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.703
CNS0095593Slightly white alabastrum(diploid) 20.656
CNS0095594Slightly white alabastrum(diploid) 30.491
CNS0095595Whole white alabastrum(diploid) 20.919
CNS0095596Whole white alabastrum(diploid) 30.368
CNS0095597Whole white alabastrum(diploid) 40.340
CNS0095598Silvery flower (diploied) 10.601
CNS0095599Silvery flower (diploied) 20.518
CNS0095600Silvery flower (diploied) 30.505
CNS0095601Golden flower (diploid) 10.871
CNS0095602Golden flower (diploid) 21.159
CNS0095603Golden flower (diploid) 30.765
CNS0095604Slightly white alabastrum(tetraploid) 11.464
CNS0095605Slightly white alabastrum(tetraploid) 20.907
CNS0095606Slightly white alabastrum(tetraploid) 33.727
CNS0095607Whole white alabastrum(tetraploid) 10.713
CNS0095608Whole white alabastrum(tetraploid) 20.343
CNS0095609Whole white alabastrum(tetraploid) 31.571
CNS0095610Silvery flower (tetraploid) 10.392
CNS0095611Silvery flower (tetraploid) 20.845
CNS0095612Silvery flower (tetraploid) 30.480
CNS0095613Golden flower (tetraploid) 10.028
CNS0095614Golden flower (tetraploid) 20.337
CNS0095615Golden flower (tetraploid) 30.286
CRA001975CRR073297Stem 10.440
CRR073298Stem 20.926
CRR073299Stem 30.667
CRR073300Leaf 10.901
CRR073301Leaf 20.904
CRR073302Leaf 30.810
CRR073303Juvenile bud 10.881
CRR073304Juvenile bud 20.284
CRR073305Juvenile bud 31.390
CRR073306Third green 10.011
CRR073307Third green 20.058
CRR073308Third green 30.081
CRR073309Second white 10.000
CRR073310Second white 20.079
CRR073311Second white 30.026
CRR073312Silver flowering 10.092
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.434
CRR073316Gold flowering 20.478
CRR073317Gold flowering 30.577
CRR073318Tawny withering 11.617
CRR073319Tawny withering 21.419
CRR073320Tawny withering 32.711