Gene detail

Detail information of GWHGAAZE026041

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282677.1	4.8172E-118	PREDICTED: putative L-ascorbate peroxidase 6 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q8GY91\|APX6_ARATH	3E-101	Putative L-ascorbate peroxidase 6
trEMBL	tr\|D7SUU6\|D7SUU6_VITVI	2E-118	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI21045.3}
TAIR10	AT4G32320.1	4E-82	ascorbate peroxidase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	72308002	72311399	-
GWHAAZE00000007	mRNA	72308002	72311399	-
GWHAAZE00000007	exon	72308002	72308066	-
GWHAAZE00000007	exon	72308792	72308913	-
GWHAAZE00000007	exon	72309518	72309601	-
GWHAAZE00000007	exon	72310178	72310274	-
GWHAAZE00000007	exon	72310371	72310413	-
GWHAAZE00000007	exon	72310497	72310594	-
GWHAAZE00000007	exon	72311143	72311270	-
GWHAAZE00000007	exon	72311335	72311399	-
GWHAAZE00000007	CDS	72311335	72311399	-
GWHAAZE00000007	CDS	72311143	72311270	-
GWHAAZE00000007	CDS	72310497	72310594	-
GWHAAZE00000007	CDS	72310371	72310413	-
GWHAAZE00000007	CDS	72310178	72310274	-
GWHAAZE00000007	CDS	72309518	72309601	-
GWHAAZE00000007	CDS	72308792	72308913	-
GWHAAZE00000007	CDS	72308002	72308066	-

Transcript Sequence
>GWHTAAZE026075 ATGCCTGCAATTTCGTTTGTTTTTCCTCTACTTACTGCGGAAACTTTTGGAGCCATTGCTGCGGACATTGGTGCCAGTGAATTTTTTCTTATACAGGGAGAGCTAAAGAAAGTAATGTCCAAGATCAAAGCAGCTGGAATACTTCGTTTAGTTTTCCATGATGCAGGGACTTTTGAAATGGATGAAAATTCAGGTGGTATGAATGGCTCTATAGTGTATGAACTTGATAGACCTGAAAACGGAGGTCTTAAAAAACCCATAAAGGCAGGATCTCTCTCTCTCTCTAGTTCTATTCTTGAGAAAGCGAAGACTGAAGTGGATATGAGACGACCAGTATCATGGGCCGATATGATAGCTGTGGCTGGAGCCGAGGCCGTGTCTGTGTGTGGAGGTCCAAAAATCCCCGTTCGGTTAGGCAGAATCGATTCAATGGAGCCTGATCCCGAAGGTAAACTTCCTGCAGAATCATTGGATGCTATTAGCCTGAAACAGTGTTTCCAAAGAAAAGGCTTCACAACACAAGAACTTGTAGCATTGTCTGGAGCACATACTCTTGGAAGTAAAGGTTTCGGAAATCCAACTGCGTTTGATAATTATTACTTCAAAATACTCGTCGATAAGCCGTGGTTATCTTCAGCCGGTATGGCAAGTATGATTGGGCTTCCCACCGATCGAGCACTTGTTGAGGATGATGAATGCTTA

Network for GWHGAAZE026041

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	43	233	2.40E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00434	E1.11.1.11	Metabolic pathways	map01100
		Ascorbate and aldarate metabolism	map00053
		Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.967
	SRR3591706	second leaf	34.248
	SRR3591707	mature leaf	31.442
	SRR3591708	Shoot apex	21.488
	SRR3591709	Stem	4.523
	SRR3591710	White floral bud	4.311
	SRR3591711	White flower	3.216
	SRR3591712	Green floral bud	7.870
	SRR3591713	Yellow flower	1.941
SRP173429	SRR8316895	Juvenile bud stage	3.465
	SRR8316896	Juvenile bud stage	5.069
	SRR8316897	Juvenile bud stage	2.759
	SRR8316894	Third green stage	2.219
	SRR8316900	Third green stage	7.274
	SRR8316901	Third green stage	5.242
	SRR8316898	Complete white stage	1.665
	SRR8316899	Complete white stage	8.227
	SRR8316903	Complete white stage	3.395
	SRR8316902	Silver flowering stage	0.947
	SRR8316904	Silver flowering stage	1.106
	SRR8316905	Silver flowering stage	0.708
	SRR8316906	Gold flowering stage	1.491
	SRR8316907	Gold flowering stage	2.214
	SRR8316908	Gold flowering stage	1.764
SRP132670	SRR6706286	Control	4.319
	SRR6706287	Light intensity 50%	3.446
	SRR6706288	Light intensity 20%	5.604
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.971
	CNS0095593	Slightly white alabastrum(diploid) 2	3.463
	CNS0095594	Slightly white alabastrum(diploid) 3	4.106
	CNS0095595	Whole white alabastrum(diploid) 2	4.170
	CNS0095596	Whole white alabastrum(diploid) 3	3.611
	CNS0095597	Whole white alabastrum(diploid) 4	4.231
	CNS0095598	Silvery flower (diploied) 1	7.267
	CNS0095599	Silvery flower (diploied) 2	3.384
	CNS0095600	Silvery flower (diploied) 3	2.016
	CNS0095601	Golden flower (diploid) 1	3.429
	CNS0095602	Golden flower (diploid) 2	1.589
	CNS0095603	Golden flower (diploid) 3	1.863
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.263
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.361
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.834
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.613
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.541
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.072
	CNS0095610	Silvery flower (tetraploid) 1	9.461
	CNS0095611	Silvery flower (tetraploid) 2	8.584
	CNS0095612	Silvery flower (tetraploid) 3	6.785
	CNS0095613	Golden flower (tetraploid) 1	5.400
	CNS0095614	Golden flower (tetraploid) 2	8.457
	CNS0095615	Golden flower (tetraploid) 3	6.355
CRA001975	CRR073297	Stem 1	5.210
	CRR073298	Stem 2	4.313
	CRR073299	Stem 3	3.680
	CRR073300	Leaf 1	7.724
	CRR073301	Leaf 2	5.620
	CRR073302	Leaf 3	3.240
	CRR073303	Juvenile bud 1	4.398
	CRR073304	Juvenile bud 2	5.155
	CRR073305	Juvenile bud 3	2.844
	CRR073306	Third green 1	0.638
	CRR073307	Third green 2	0.810
	CRR073308	Third green 3	2.665
	CRR073309	Second white 1	0.853
	CRR073310	Second white 2	0.130
	CRR073311	Second white 3	0.152
	CRR073312	Silver flowering 1	0.338
	CRR073313	Silver flowering 2	1.176
	CRR073314	Silver flowering 3	0.073
	CRR073315	Gold flowering 1	30.488
	CRR073316	Gold flowering 2	45.124
	CRR073317	Gold flowering 3	15.140
	CRR073318	Tawny withering 1	2.892
	CRR073319	Tawny withering 2	2.703
	CRR073320	Tawny withering 3	2.888