Gene detail

Detail information of GWHGAAZE026071

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI21104.3	1.0377E-142	unnamed protein product [Vitis vinifera]
COG	YP_003280830.1	1E-16	nuclear protein SET
Swissprot	tr\|Q9M364\|ATX3_ARATH	9E-25	Histone-lysine N-methyltransferase ATX3
trEMBL	tr\|F6H3V7\|F6H3V7_VITVI	7E-142	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46846.1}
TAIR10	AT3G61740.2	3E-23	SET domain protein 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	72843438	72846387	+
GWHAAZE00000007	mRNA	72843438	72846387	+
GWHAAZE00000007	exon	72843438	72843608	+
GWHAAZE00000007	exon	72843686	72843865	+
GWHAAZE00000007	exon	72844706	72844819	+
GWHAAZE00000007	exon	72844895	72845077	+
GWHAAZE00000007	exon	72846211	72846387	+
GWHAAZE00000007	CDS	72843438	72843608	+
GWHAAZE00000007	CDS	72843686	72843865	+
GWHAAZE00000007	CDS	72844706	72844819	+
GWHAAZE00000007	CDS	72844895	72845077	+
GWHAAZE00000007	CDS	72846211	72846387	+

Transcript Sequence
>GWHTAAZE026105 ATGCAGGGTCTTCTTCAAAGTGAGGTTGAAGGTGTTGATAACGAGAATGTTGGTTTTTATGGAAGATGTGAGCTTCATGCAACACAGCACCAGCAAAATTTTGATCATGACCCCGGTGACATTGGTACTAATTTTCCTGGTGAAAAGAAGTTAACTTGTGCTCGAACCGAGGGTTACAAAGGCCGCAAGCGTGACGGTTTTCGGCATAATAATCCTCGTCAGTCTGAGGGCACTGGTGGATGCTTTGTTCCACAAGAACAGCTGAATGCATGGCTTCATATTAATAAGCTAAAGTCATGCACAAAAGGGCTTCCGAAGCTGACGCATTCAGATGTTGAGCATGATTGTCGGAAAGAATATGCTCGGTATAGACATTCAAAAGCTTGGAAACATTTGGTGGTATACAAGTCGGGAATCCATGCACTTGGTCTATACACATCTCAATTCATTTCACGTGGTGCAATGGTTGTTGAATATGTTGGTGAGATAGTGGGGCTTCGAGTGGCTGATAAAAGAGAAAGGGAATATCAGTCTGGAAGGAAATTACAGTACAAGAGTGCTTGCTATTTCTTTAAGATAGATAAAGAACATATTATTGATGCCACTCGCAAAGGCGGCATTGCTCGATTTGTTAACCATTCATGCTCGGTACTAAAATGTTTGCACGGTAAAAATGCATGGGGCTTGCAGGTAGTGTTTTTTGCAGAGAGAGACATTTATCCTGGAGAAGAGATAACATATGACTACCATTTTAACAATGAGGATGAAGGTAAGAAAATTCTGTGTTTTTGCAATTCCAAAAGCTGCAGGCGTTATTTAAACTAG

Network for GWHGAAZE026071

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00856.29	SET	143	249	1.10E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.578
	SRR3591706	second leaf	14.193
	SRR3591707	mature leaf	18.423
	SRR3591708	Shoot apex	23.978
	SRR3591709	Stem	18.789
	SRR3591710	White floral bud	17.940
	SRR3591711	White flower	19.326
	SRR3591712	Green floral bud	17.992
	SRR3591713	Yellow flower	15.564
SRP173429	SRR8316895	Juvenile bud stage	10.528
	SRR8316896	Juvenile bud stage	15.025
	SRR8316897	Juvenile bud stage	7.385
	SRR8316894	Third green stage	6.666
	SRR8316900	Third green stage	12.625
	SRR8316901	Third green stage	12.045
	SRR8316898	Complete white stage	4.135
	SRR8316899	Complete white stage	15.626
	SRR8316903	Complete white stage	10.589
	SRR8316902	Silver flowering stage	9.225
	SRR8316904	Silver flowering stage	12.257
	SRR8316905	Silver flowering stage	4.788
	SRR8316906	Gold flowering stage	18.503
	SRR8316907	Gold flowering stage	16.292
	SRR8316908	Gold flowering stage	18.179
SRP132670	SRR6706286	Control	12.412
	SRR6706287	Light intensity 50%	10.042
	SRR6706288	Light intensity 20%	12.753
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.514
	CNS0095593	Slightly white alabastrum(diploid) 2	14.037
	CNS0095594	Slightly white alabastrum(diploid) 3	13.483
	CNS0095595	Whole white alabastrum(diploid) 2	11.723
	CNS0095596	Whole white alabastrum(diploid) 3	10.803
	CNS0095597	Whole white alabastrum(diploid) 4	11.698
	CNS0095598	Silvery flower (diploied) 1	21.259
	CNS0095599	Silvery flower (diploied) 2	19.759
	CNS0095600	Silvery flower (diploied) 3	16.922
	CNS0095601	Golden flower (diploid) 1	25.220
	CNS0095602	Golden flower (diploid) 2	20.010
	CNS0095603	Golden flower (diploid) 3	17.683
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.757
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.047
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.400
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.867
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.456
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.778
	CNS0095610	Silvery flower (tetraploid) 1	17.024
	CNS0095611	Silvery flower (tetraploid) 2	15.918
	CNS0095612	Silvery flower (tetraploid) 3	12.648
	CNS0095613	Golden flower (tetraploid) 1	11.733
	CNS0095614	Golden flower (tetraploid) 2	15.990
	CNS0095615	Golden flower (tetraploid) 3	13.629
CRA001975	CRR073297	Stem 1	16.151
	CRR073298	Stem 2	14.211
	CRR073299	Stem 3	8.625
	CRR073300	Leaf 1	12.444
	CRR073301	Leaf 2	11.518
	CRR073302	Leaf 3	6.505
	CRR073303	Juvenile bud 1	9.799
	CRR073304	Juvenile bud 2	3.162
	CRR073305	Juvenile bud 3	8.701
	CRR073306	Third green 1	2.171
	CRR073307	Third green 2	1.062
	CRR073308	Third green 3	2.495
	CRR073309	Second white 1	1.962
	CRR073310	Second white 2	5.127
	CRR073311	Second white 3	5.374
	CRR073312	Silver flowering 1	4.168
	CRR073313	Silver flowering 2	3.121
	CRR073314	Silver flowering 3	4.237
	CRR073315	Gold flowering 1	4.745
	CRR073316	Gold flowering 2	8.801
	CRR073317	Gold flowering 3	2.244
	CRR073318	Tawny withering 1	9.902
	CRR073319	Tawny withering 2	12.301
	CRR073320	Tawny withering 3	12.326