Detail information of GWHGAAZE026081


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002285330.16.44236E-40PREDICTED: Golgi SNAP receptor complex member 1-1 [Vitis vinifera]
Swissprottr|Q9LMP7|GOS11_ARATH2E-39Golgi SNAP receptor complex member 1-1
trEMBLtr|D7SUY6|D7SUY6_VITVI2E-40Golgi SNAP receptor complex member 1 {ECO:0000256|PIRNR:PIRNR027109}
TAIR10AT1G15880.13E-32golgi snare 11

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7303051073032522-
GWHAAZE00000007mRNA7303051073032522-
GWHAAZE00000007exon7303235873032522-
GWHAAZE00000007exon7303051073030623-
GWHAAZE00000007CDS7303235873032522-
GWHAAZE00000007CDS7303051073030623-
Transcript Sequence

Network for GWHGAAZE026081

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12352.9V-SNARE_C17671.00E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08495GOSR1, GOS1 SNARE interactions in vesicular transport map04130

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.930
SRR3591706second leaf2.567
SRR3591707mature leaf3.816
SRR3591708Shoot apex4.021
SRR3591709Stem9.061
SRR3591710White floral bud5.417
SRR3591711White flower8.588
SRR3591712Green floral bud4.446
SRR3591713Yellow flower9.611
SRP173429 SRR8316895Juvenile bud stage 2.917
SRR8316896Juvenile bud stage 5.421
SRR8316897Juvenile bud stage 2.590
SRR8316894Third green stage 1.674
SRR8316900Third green stage 5.805
SRR8316901Third green stage 5.813
SRR8316898Complete white stage 4.162
SRR8316899Complete white stage 8.093
SRR8316903Complete white stage 2.941
SRR8316902Silver flowering stage4.871
SRR8316904Silver flowering stage4.237
SRR8316905Silver flowering stage2.018
SRR8316906Gold flowering stage 6.924
SRR8316907Gold flowering stage 5.909
SRR8316908Gold flowering stage 7.283
SRP132670SRR6706286Control3.645
SRR6706287Light intensity 50%3.334
SRR6706288Light intensity 20%4.238
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.001
CNS0095593Slightly white alabastrum(diploid) 26.122
CNS0095594Slightly white alabastrum(diploid) 36.590
CNS0095595Whole white alabastrum(diploid) 28.431
CNS0095596Whole white alabastrum(diploid) 35.186
CNS0095597Whole white alabastrum(diploid) 47.143
CNS0095598Silvery flower (diploied) 16.720
CNS0095599Silvery flower (diploied) 23.991
CNS0095600Silvery flower (diploied) 36.617
CNS0095601Golden flower (diploid) 15.352
CNS0095602Golden flower (diploid) 26.571
CNS0095603Golden flower (diploid) 35.524
CNS0095604Slightly white alabastrum(tetraploid) 17.047
CNS0095605Slightly white alabastrum(tetraploid) 26.352
CNS0095606Slightly white alabastrum(tetraploid) 36.991
CNS0095607Whole white alabastrum(tetraploid) 17.810
CNS0095608Whole white alabastrum(tetraploid) 25.096
CNS0095609Whole white alabastrum(tetraploid) 35.695
CNS0095610Silvery flower (tetraploid) 17.993
CNS0095611Silvery flower (tetraploid) 27.904
CNS0095612Silvery flower (tetraploid) 39.612
CNS0095613Golden flower (tetraploid) 18.379
CNS0095614Golden flower (tetraploid) 27.085
CNS0095615Golden flower (tetraploid) 35.770
CRA001975CRR073297Stem 12.651
CRR073298Stem 22.820
CRR073299Stem 33.322
CRR073300Leaf 13.898
CRR073301Leaf 23.131
CRR073302Leaf 32.121
CRR073303Juvenile bud 13.777
CRR073304Juvenile bud 22.654
CRR073305Juvenile bud 32.313
CRR073306Third green 13.132
CRR073307Third green 23.798
CRR073308Third green 33.290
CRR073309Second white 18.160
CRR073310Second white 23.443
CRR073311Second white 33.776
CRR073312Silver flowering 13.443
CRR073313Silver flowering 23.956
CRR073314Silver flowering 33.097
CRR073315Gold flowering 12.529
CRR073316Gold flowering 22.630
CRR073317Gold flowering 32.077
CRR073318Tawny withering 13.359
CRR073319Tawny withering 22.043
CRR073320Tawny withering 32.578