Detail information of GWHGAAZE026085


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002282918.20PREDICTED: CHD3-type chromatin-remodeling factor PICKLE [Vitis vinifera]
COGYP_007297659.12E-71DNA/RNA helicase, superfamily II, SNF2 family
Swissprottr|Q9S775|PKL_ARATH0CHD3-type chromatin-remodeling factor PICKLE
trEMBLtr|F6H3J1|F6H3J1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB46826.1}
TAIR10AT2G25170.10chromatin remodeling factor CHD3 (PICKLE)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7306535873083684-
GWHAAZE00000007mRNA7306535873083684-
GWHAAZE00000007exon7306535873065855-
GWHAAZE00000007exon7306598873066061-
GWHAAZE00000007exon7306681073066945-
GWHAAZE00000007exon7306735073067761-
GWHAAZE00000007exon7306902573069155-
GWHAAZE00000007exon7307051373070589-
GWHAAZE00000007exon7307070473070765-
GWHAAZE00000007exon7307108273071156-
GWHAAZE00000007exon7307189973072004-
GWHAAZE00000007exon7307210873072270-
GWHAAZE00000007exon7307317573073372-
GWHAAZE00000007exon7307381773073901-
GWHAAZE00000007exon7307453573074644-
GWHAAZE00000007exon7307480473074926-
GWHAAZE00000007exon7307503773075103-
GWHAAZE00000007exon7307614973076318-
GWHAAZE00000007exon7307640673076544-
GWHAAZE00000007exon7307744273077539-
GWHAAZE00000007exon7307762573077767-
GWHAAZE00000007exon7307852673078625-
GWHAAZE00000007exon7307870973078759-
GWHAAZE00000007exon7308022473080331-
GWHAAZE00000007exon7308074873080963-
GWHAAZE00000007exon7308104173081177-
GWHAAZE00000007exon7308130373081715-
GWHAAZE00000007exon7308209173082252-
GWHAAZE00000007exon7308270273082856-
GWHAAZE00000007exon7308319773083334-
GWHAAZE00000007exon7308357473083684-
GWHAAZE00000007CDS7308357473083684-
GWHAAZE00000007CDS7308319773083334-
GWHAAZE00000007CDS7308270273082856-
GWHAAZE00000007CDS7308209173082252-
GWHAAZE00000007CDS7308130373081715-
GWHAAZE00000007CDS7308104173081177-
GWHAAZE00000007CDS7308074873080963-
GWHAAZE00000007CDS7308022473080331-
GWHAAZE00000007CDS7307870973078759-
GWHAAZE00000007CDS7307852673078625-
GWHAAZE00000007CDS7307762573077767-
GWHAAZE00000007CDS7307744273077539-
GWHAAZE00000007CDS7307640673076544-
GWHAAZE00000007CDS7307614973076318-
GWHAAZE00000007CDS7307503773075103-
GWHAAZE00000007CDS7307480473074926-
GWHAAZE00000007CDS7307453573074644-
GWHAAZE00000007CDS7307381773073901-
GWHAAZE00000007CDS7307317573073372-
GWHAAZE00000007CDS7307210873072270-
GWHAAZE00000007CDS7307189973072004-
GWHAAZE00000007CDS7307108273071156-
GWHAAZE00000007CDS7307070473070765-
GWHAAZE00000007CDS7307051373070589-
GWHAAZE00000007CDS7306902573069155-
GWHAAZE00000007CDS7306735073067761-
GWHAAZE00000007CDS7306681073066945-
GWHAAZE00000007CDS7306598873066061-
GWHAAZE00000007CDS7306535873065855-
Transcript Sequence

Network for GWHGAAZE026085

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00628.30PHD42841.70E-08
PF00385.25Chromo901459.50E-10
PF00385.25Chromo1812283.90E-14
PF00176.24SNF2_N3185971.40E-63
PF00271.32Helicase_C6197323.80E-17
PF06465.14DUF10878559164.40E-23
PF06461.12DUF108695310844.50E-53
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf35.071
SRR3591706second leaf19.113
SRR3591707mature leaf18.848
SRR3591708Shoot apex29.151
SRR3591709Stem32.510
SRR3591710White floral bud38.066
SRR3591711White flower49.316
SRR3591712Green floral bud38.648
SRR3591713Yellow flower33.605
SRP173429 SRR8316895Juvenile bud stage 19.920
SRR8316896Juvenile bud stage 27.945
SRR8316897Juvenile bud stage 14.443
SRR8316894Third green stage 13.299
SRR8316900Third green stage 33.192
SRR8316901Third green stage 31.616
SRR8316898Complete white stage 8.672
SRR8316899Complete white stage 27.185
SRR8316903Complete white stage 24.487
SRR8316902Silver flowering stage17.961
SRR8316904Silver flowering stage26.931
SRR8316905Silver flowering stage11.929
SRR8316906Gold flowering stage 32.707
SRR8316907Gold flowering stage 32.967
SRR8316908Gold flowering stage 31.253
SRP132670SRR6706286Control27.561
SRR6706287Light intensity 50%27.340
SRR6706288Light intensity 20%26.661
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.426
CNS0095593Slightly white alabastrum(diploid) 215.594
CNS0095594Slightly white alabastrum(diploid) 316.768
CNS0095595Whole white alabastrum(diploid) 217.760
CNS0095596Whole white alabastrum(diploid) 316.326
CNS0095597Whole white alabastrum(diploid) 417.908
CNS0095598Silvery flower (diploied) 121.217
CNS0095599Silvery flower (diploied) 217.977
CNS0095600Silvery flower (diploied) 339.284
CNS0095601Golden flower (diploid) 118.550
CNS0095602Golden flower (diploid) 236.730
CNS0095603Golden flower (diploid) 333.708
CNS0095604Slightly white alabastrum(tetraploid) 122.664
CNS0095605Slightly white alabastrum(tetraploid) 217.738
CNS0095606Slightly white alabastrum(tetraploid) 337.484
CNS0095607Whole white alabastrum(tetraploid) 117.971
CNS0095608Whole white alabastrum(tetraploid) 216.414
CNS0095609Whole white alabastrum(tetraploid) 329.819
CNS0095610Silvery flower (tetraploid) 144.118
CNS0095611Silvery flower (tetraploid) 234.153
CNS0095612Silvery flower (tetraploid) 331.668
CNS0095613Golden flower (tetraploid) 117.855
CNS0095614Golden flower (tetraploid) 226.966
CNS0095615Golden flower (tetraploid) 335.122
CRA001975CRR073297Stem 124.098
CRR073298Stem 223.055
CRR073299Stem 317.671
CRR073300Leaf 127.296
CRR073301Leaf 221.724
CRR073302Leaf 313.238
CRR073303Juvenile bud 117.096
CRR073304Juvenile bud 213.416
CRR073305Juvenile bud 321.220
CRR073306Third green 110.510
CRR073307Third green 27.928
CRR073308Third green 311.995
CRR073309Second white 18.415
CRR073310Second white 214.377
CRR073311Second white 315.127
CRR073312Silver flowering 19.639
CRR073313Silver flowering 29.147
CRR073314Silver flowering 310.999
CRR073315Gold flowering 16.010
CRR073316Gold flowering 210.906
CRR073317Gold flowering 34.601
CRR073318Tawny withering 119.050
CRR073319Tawny withering 217.540
CRR073320Tawny withering 316.021