Gene detail

Detail information of GWHGAAZE026089

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003631761.1	0	PREDICTED: transcription initiation factor TFIID subunit 5 [Vitis vinifera]
COG	YP_003899920.1	1E-48	WD40 repeat-containing protein
Swissprot	tr\|Q6S7B0\|TAF5_ARATH	0	Transcription initiation factor TFIID subunit 5
trEMBL	tr\|D7SUX1\|D7SUX1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI21070.3}
TAIR10	AT5G25150.1	0	TBP-associated factor 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	73199963	73214101	+
GWHAAZE00000007	mRNA	73199963	73214101	+
GWHAAZE00000007	exon	73199963	73200010	+
GWHAAZE00000007	exon	73200080	73200140	+
GWHAAZE00000007	exon	73200472	73200569	+
GWHAAZE00000007	exon	73201615	73201675	+
GWHAAZE00000007	exon	73202059	73202175	+
GWHAAZE00000007	exon	73202288	73202385	+
GWHAAZE00000007	exon	73202493	73202549	+
GWHAAZE00000007	exon	73203804	73203891	+
GWHAAZE00000007	exon	73204004	73204113	+
GWHAAZE00000007	exon	73205468	73205575	+
GWHAAZE00000007	exon	73206229	73206380	+
GWHAAZE00000007	exon	73207658	73207768	+
GWHAAZE00000007	exon	73208924	73208993	+
GWHAAZE00000007	exon	73209073	73209112	+
GWHAAZE00000007	exon	73209961	73210152	+
GWHAAZE00000007	exon	73210767	73210843	+
GWHAAZE00000007	exon	73211753	73211869	+
GWHAAZE00000007	exon	73211966	73212231	+
GWHAAZE00000007	exon	73212929	73213024	+
GWHAAZE00000007	exon	73213114	73213189	+
GWHAAZE00000007	exon	73214048	73214101	+
GWHAAZE00000007	CDS	73199963	73200010	+
GWHAAZE00000007	CDS	73200080	73200140	+
GWHAAZE00000007	CDS	73200472	73200569	+
GWHAAZE00000007	CDS	73201615	73201675	+
GWHAAZE00000007	CDS	73202059	73202175	+
GWHAAZE00000007	CDS	73202288	73202385	+
GWHAAZE00000007	CDS	73202493	73202549	+
GWHAAZE00000007	CDS	73203804	73203891	+
GWHAAZE00000007	CDS	73204004	73204113	+
GWHAAZE00000007	CDS	73205468	73205575	+
GWHAAZE00000007	CDS	73206229	73206380	+
GWHAAZE00000007	CDS	73207658	73207768	+
GWHAAZE00000007	CDS	73208924	73208993	+
GWHAAZE00000007	CDS	73209073	73209112	+
GWHAAZE00000007	CDS	73209961	73210152	+
GWHAAZE00000007	CDS	73210767	73210843	+
GWHAAZE00000007	CDS	73211753	73211869	+
GWHAAZE00000007	CDS	73211966	73212231	+
GWHAAZE00000007	CDS	73212929	73213024	+
GWHAAZE00000007	CDS	73213114	73213189	+
GWHAAZE00000007	CDS	73214048	73214101	+

Transcript Sequence
>GWHTAAZE026123 ATGTCTTATCTTTGTCTTCCTTTTGGTGTTTCCGCAAGTATAAGACAGGGATTTGTGAAGTTGGAAGGGACATTTTATGGGAAGGATAGTGCTGGAGGGGAAACTTTACTGTTCCCTATTTACAGATCGGAGACTGTTCCTGCCCAATACCAGGATGGGTATAGCAAGCTACGGTCTTGGACTTACAGTTCACTAGATTTATACAAGAACAATATTGACTTGAAATTCCTCAAGTCTATAGGGAATTGTCCTAAATTATACGTTCTTGGAATATTCATTTACCTAGCTTTTATTTCATCTATGCAGCATGAGTTACTTCATGTCCTCTATCCGGTATTTATCCATTGCTTCATGGATCTTGTGGCGAAAGGACATCTTCAAGAAGCTCGATCTTTTTTCAATAGCTTCCGCGAAGACCATGAGATGATGCATTTACGGGACCTCCAAAAGTTGGAAGGGGTTCTTTCTCCCTCTCATCTGGAGGAGATGGAGTTTGCTCATTCCCTGAGGCAGAGCAAAGTGAATATAAAAATATGTCAGTACTCTTATGAGCTTTTGCTGCAATATCTACATAAAACACAATCAATTACAATGCTTGGGATTATCAACGAGCGTATTGACTTCCAAGTTTCTCCTGGACAGCCTAGCTCTATTTCCGATGATGCCGAAGTTGTAACACTTATTGGGAGCGGCCAGGATGCTGCTAATCTAATTAATCAAAATGAAATACATTGGGGGTTGCTTGAAGATTCTTTAGAAGAGCGGTTGGAGAAAACTGGTGGTTTGCTTTCAGATACGGAGAAGGCAGAAGGAGACACTAAGGAAGGGGAATTGGAAGAAAACAAAAAAAGAACAGTTGAGGGAGGAAAGCAGGGGGCTTCACTCAAAAAGATGAAAAAGGACAAGGTTGTTGGTGCAACGGGGAAAGCATCTCGAACTGAGGCCATCACAGTATCTGCAGCTCCACGTGTCAAACCAGAGCTTACCCTGCCAGTAATACCAACAGAGGTAGAACAGTCTATTCTTGAAGACCTACGGAACCGTGTGCAATTAAGCAGTGTCGCATTGCCTTCAGTCAGCTTCTATACGTTTATTAACACACACAATGGGTTAAACTGTTCATCTATTTCCCAAGATGGATCGTTGGTTGCTGGTGGATTCTCAGACTCATCACTGAAGGTGTGGGACATGGCAAAGCTTGGGCAACAATCTGGCAGTACTATTTTGCAGGGTGAAACTGATTTGGTACCTAGTGAAAATGGGCTTGGATCAAATGGTGGCAAAAGGTCTTATGCATTATATCAGGGTCATTCTGGACCAGTTTATTCTACCACTTTTAGTCCTTTTGGGGATTTTCTTCTATCCTCTTCATCGGATTCAACAAGTATGTCATCCTTGGTTTCTTTTGCCTTTCGATTATGGAGCACGAAGTTAAATGCAAACCTTGTTTGCTACAAGGGTCATAATTACCCCGTGTGGGATGTCCAGTTTAGTCCGCGTGGACACTACTTCGCCAGCTCCTCGCACGATCGAACTGCAAGGATCTGGTCAATGGATAGAATCCAACCTTTAAGAATATTGGCAGGCCACTTATCTGATGTTGATTGTGTTCAATGGCATATGAATTGCAACTACATTGCAACCGGGTCTAGCGACAAAACTGTTCGCTTGTGGGATGTACAAACAGGGGAATGCGTTAGAATTTTCATCGGTCACAGGAGTATGATATTATCCTTAGCAATGTCACCTGATGGTCGTTACATGGCATCTGGTGATGAAGATGGAACAATTATGATGTGGGATCTCTCTACTGGTCGATGTGTTACCCCATTGGTGGGCCACACCTCATGCGTGTGGACCCTTGGTTTTAGCTGTGAAGGTTCACTACTTGCATCTGGTTCTGCTGACTGTACTGTAAAATTGTGGGATGTGACTACTAGCACAAGGACTCCGAAAACAGAAGAAAACAAAAGTGGGAATACAAACAGACTCAGATCATTGAAGACCCTACCTACCAAATCTACTCCGGTCTATGCTTTACAGTTCTCTCGAAGGAATCTTCTCTTTGCTGCCGGGGCTCTCTCACCAGGTTTATGA

Network for GWHGAAZE026089

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04494.16	TFIID_NTD2	100	206	2.50E-32
PF00400.33	WD40	366	396	0.013
PF00400.33	WD40	434	461	0.034
PF00400.33	WD40	482	517	5.20E-07
PF00400.33	WD40	522	559	9.10E-09
PF00400.33	WD40	563	601	3.30E-09
PF00400.33	WD40	605	643	1.60E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K03130	TAF5	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.426
	SRR3591706	second leaf	35.193
	SRR3591707	mature leaf	26.214
	SRR3591708	Shoot apex	48.651
	SRR3591709	Stem	36.935
	SRR3591710	White floral bud	32.735
	SRR3591711	White flower	31.324
	SRR3591712	Green floral bud	30.910
	SRR3591713	Yellow flower	28.736
SRP173429	SRR8316895	Juvenile bud stage	22.776
	SRR8316896	Juvenile bud stage	30.549
	SRR8316897	Juvenile bud stage	14.124
	SRR8316894	Third green stage	12.857
	SRR8316900	Third green stage	26.087
	SRR8316901	Third green stage	25.772
	SRR8316898	Complete white stage	9.098
	SRR8316899	Complete white stage	31.152
	SRR8316903	Complete white stage	17.340
	SRR8316902	Silver flowering stage	10.607
	SRR8316904	Silver flowering stage	15.522
	SRR8316905	Silver flowering stage	6.561
	SRR8316906	Gold flowering stage	22.401
	SRR8316907	Gold flowering stage	23.259
	SRR8316908	Gold flowering stage	19.995
SRP132670	SRR6706286	Control	36.006
	SRR6706287	Light intensity 50%	37.331
	SRR6706288	Light intensity 20%	37.328
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.771
	CNS0095593	Slightly white alabastrum(diploid) 2	19.868
	CNS0095594	Slightly white alabastrum(diploid) 3	18.380
	CNS0095595	Whole white alabastrum(diploid) 2	15.759
	CNS0095596	Whole white alabastrum(diploid) 3	13.342
	CNS0095597	Whole white alabastrum(diploid) 4	14.311
	CNS0095598	Silvery flower (diploied) 1	25.066
	CNS0095599	Silvery flower (diploied) 2	20.754
	CNS0095600	Silvery flower (diploied) 3	17.092
	CNS0095601	Golden flower (diploid) 1	19.149
	CNS0095602	Golden flower (diploid) 2	21.407
	CNS0095603	Golden flower (diploid) 3	18.958
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.269
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.553
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.201
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.863
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.992
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.739
	CNS0095610	Silvery flower (tetraploid) 1	23.194
	CNS0095611	Silvery flower (tetraploid) 2	22.588
	CNS0095612	Silvery flower (tetraploid) 3	17.609
	CNS0095613	Golden flower (tetraploid) 1	13.676
	CNS0095614	Golden flower (tetraploid) 2	21.268
	CNS0095615	Golden flower (tetraploid) 3	14.820
CRA001975	CRR073297	Stem 1	39.036
	CRR073298	Stem 2	34.224
	CRR073299	Stem 3	24.075
	CRR073300	Leaf 1	34.489
	CRR073301	Leaf 2	34.053
	CRR073302	Leaf 3	21.429
	CRR073303	Juvenile bud 1	22.180
	CRR073304	Juvenile bud 2	14.263
	CRR073305	Juvenile bud 3	19.067
	CRR073306	Third green 1	7.034
	CRR073307	Third green 2	5.145
	CRR073308	Third green 3	9.039
	CRR073309	Second white 1	5.510
	CRR073310	Second white 2	12.575
	CRR073311	Second white 3	8.783
	CRR073312	Silver flowering 1	6.010
	CRR073313	Silver flowering 2	5.747
	CRR073314	Silver flowering 3	7.840
	CRR073315	Gold flowering 1	14.158
	CRR073316	Gold flowering 2	25.234
	CRR073317	Gold flowering 3	6.553
	CRR073318	Tawny withering 1	23.572
	CRR073319	Tawny withering 2	21.553
	CRR073320	Tawny withering 3	24.263