Gene detail

Detail information of GWHGAAZE026097

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP07839.1	0	unnamed protein product [Coffea canephora]
COG	YP_002297565.1	8E-71	enoyl-CoA hydratase
Swissprot	tr\|Q8RXN4\|HIBC5_ARATH	0	3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial (Precursor)
trEMBL	tr\|A0A068UHZ1\|A0A068UHZ1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_28 {ECO:0000313\|EMBL:CDP07839.1}
TAIR10	AT4G31810.1	4E-150	ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	73401347	73409730	+
GWHAAZE00000007	mRNA	73401347	73409730	+
GWHAAZE00000007	exon	73401347	73401388	+
GWHAAZE00000007	exon	73402993	73403073	+
GWHAAZE00000007	exon	73403291	73403359	+
GWHAAZE00000007	exon	73403466	73403529	+
GWHAAZE00000007	exon	73404319	73404398	+
GWHAAZE00000007	exon	73405360	73405443	+
GWHAAZE00000007	exon	73406269	73406353	+
GWHAAZE00000007	exon	73406904	73406989	+
GWHAAZE00000007	exon	73407088	73407209	+
GWHAAZE00000007	exon	73408072	73408132	+
GWHAAZE00000007	exon	73408494	73408592	+
GWHAAZE00000007	exon	73408687	73408788	+
GWHAAZE00000007	exon	73408937	73408978	+
GWHAAZE00000007	exon	73409353	73409730	+
GWHAAZE00000007	CDS	73401347	73401388	+
GWHAAZE00000007	CDS	73402993	73403073	+
GWHAAZE00000007	CDS	73403291	73403359	+
GWHAAZE00000007	CDS	73403466	73403529	+
GWHAAZE00000007	CDS	73404319	73404398	+
GWHAAZE00000007	CDS	73405360	73405443	+
GWHAAZE00000007	CDS	73406269	73406353	+
GWHAAZE00000007	CDS	73406904	73406989	+
GWHAAZE00000007	CDS	73407088	73407209	+
GWHAAZE00000007	CDS	73408072	73408132	+
GWHAAZE00000007	CDS	73408494	73408592	+
GWHAAZE00000007	CDS	73408687	73408788	+
GWHAAZE00000007	CDS	73408937	73408978	+
GWHAAZE00000007	CDS	73409353	73409472	+
GWHAAZE00000007	three_prime_UTR	73409473	73409730	+

Transcript Sequence
>GWHTAAZE026131 ATGGCTGCAGCTACAGTGGAGTTAATCAGAGAGAGGGTGAGGGTTTTAGTTGAAGGGAGAGCTTATTCAAGAGCAGCCGTACTCAATAGACCCTCTTCACTCAATGCTATCACTACTTCTATGGCTACTCGGTTGGAAAGACTGTATGAGTCATGGGAGGAAAATCCGGATATTGGATTTGTTTTAATGAAGGGTAGTGGCAAGGCATTTTGTTCTGGTAGTGATGTTGTTGCCCTCCATCAGTCGCTTAATGAAGGGAAGGTTGAAGATTGTAGAACTTTTTTCCGGACATTGAATAAATTTATATACCTTTTAGGAACATATCTGAAACCGCACGTGGCTATCTTGGATGGTATCACTATGGGTGGTGGGGCGGGTATTTCACTTCTCGGAATGTTCCGCGTTGTAACCGATAAAACTGTTTTTTCTACCCCAGAGGCTCAGTTGGGTTTCCATCCTGATGCAGGGGCTTCTTTTTATCTTTCTCGTCTACCTGGTTATTTAGGGGAATACTTGGCTCTGACTGGAGAAAAGCTTAATGGTGTAGAAATGGTTGCCTGTGGCCTAGCTACACACTATTCACTTAATGCGAGACTTGCTTGGATGGAAGACCGGCTTGGTAAATTGATGACTGATGACACTTCTGTTATAGAGAATTCTCTTGCCCAATATGGTGACCTTGTCTATCCAGATAAGAGGAGCATTCTTCACAAGATAAAAAGAATTGATAAATGTTTCAGCCTGGACACTGTTGAGGAGATTATGGATGCTCTGGAAAATGAGGCAGCAGAGACTCGTGATGAATGGTCCATCACAGCCCTGAAGAAACTAAAAGAAGCCTCCCCTTTGAGCTTGAAGGTCACTTTGCGATCTATTAGAGAAGGTAGATACCAGCCTCTTGACCAATGCCTGGCTCGTGAATATCGCATGTCCTTAAATTGGATCTCCAAACAGATCTCAAATGACTTTTGCGAGGGTGTTCGCGCGAGATTAGTTGACAAGGACTTTGCTCCAAAGTGGGGTCCGTCGAGCTTAGGCGAAGTAACCGATGACATGGTCGATGCTTATTTCGTGCAACTTGATGAGTTCGGACCCGAACTAAACTTGCCTACTGCGCTTCGAGAGCCTTCCACCTGATGGGATCCCAGAAGGTACAAGCTTTCAAAGCAGGAACTTTTTGAATTTGTGTCGAGTTTTTAGCAGCTAATTACGTTGATTCAGTTATGTGGCAAATGTTCCATATAACTAAACTTTCAGTAGTTTCTCTTTTTTACCTTATATTCTGTAGTCATGTAGAAAATTATTTTGATTCATTCTGCTTTACCGAGCGTTATTTTTTTTATTCGATGAGCAATTGCAACTACTATGGGGCTTGGCTTAGCAGGGCTAAAACAA

Network for GWHGAAZE026097

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16113.6	ECH_2	25	357	1.70E-112

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0003860	molecular_function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.067
	SRR3591706	second leaf	20.074
	SRR3591707	mature leaf	12.844
	SRR3591708	Shoot apex	38.166
	SRR3591709	Stem	18.250
	SRR3591710	White floral bud	16.935
	SRR3591711	White flower	16.689
	SRR3591712	Green floral bud	24.642
	SRR3591713	Yellow flower	11.151
SRP173429	SRR8316895	Juvenile bud stage	22.434
	SRR8316896	Juvenile bud stage	31.091
	SRR8316897	Juvenile bud stage	11.742
	SRR8316894	Third green stage	11.795
	SRR8316900	Third green stage	31.509
	SRR8316901	Third green stage	29.650
	SRR8316898	Complete white stage	5.612
	SRR8316899	Complete white stage	32.931
	SRR8316903	Complete white stage	10.270
	SRR8316902	Silver flowering stage	6.553
	SRR8316904	Silver flowering stage	7.465
	SRR8316905	Silver flowering stage	3.667
	SRR8316906	Gold flowering stage	12.479
	SRR8316907	Gold flowering stage	12.259
	SRR8316908	Gold flowering stage	14.784
SRP132670	SRR6706286	Control	9.983
	SRR6706287	Light intensity 50%	11.223
	SRR6706288	Light intensity 20%	12.772
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.494
	CNS0095593	Slightly white alabastrum(diploid) 2	23.696
	CNS0095594	Slightly white alabastrum(diploid) 3	20.304
	CNS0095595	Whole white alabastrum(diploid) 2	16.396
	CNS0095596	Whole white alabastrum(diploid) 3	17.398
	CNS0095597	Whole white alabastrum(diploid) 4	13.883
	CNS0095598	Silvery flower (diploied) 1	16.010
	CNS0095599	Silvery flower (diploied) 2	14.745
	CNS0095600	Silvery flower (diploied) 3	12.561
	CNS0095601	Golden flower (diploid) 1	11.746
	CNS0095602	Golden flower (diploid) 2	9.272
	CNS0095603	Golden flower (diploid) 3	10.036
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.730
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.657
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.307
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.360
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.689
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.032
	CNS0095610	Silvery flower (tetraploid) 1	10.264
	CNS0095611	Silvery flower (tetraploid) 2	14.272
	CNS0095612	Silvery flower (tetraploid) 3	10.198
	CNS0095613	Golden flower (tetraploid) 1	5.689
	CNS0095614	Golden flower (tetraploid) 2	8.103
	CNS0095615	Golden flower (tetraploid) 3	3.726
CRA001975	CRR073297	Stem 1	24.315
	CRR073298	Stem 2	22.644
	CRR073299	Stem 3	22.584
	CRR073300	Leaf 1	21.027
	CRR073301	Leaf 2	22.651
	CRR073302	Leaf 3	22.660
	CRR073303	Juvenile bud 1	23.145
	CRR073304	Juvenile bud 2	14.146
	CRR073305	Juvenile bud 3	20.596
	CRR073306	Third green 1	1.342
	CRR073307	Third green 2	1.858
	CRR073308	Third green 3	2.457
	CRR073309	Second white 1	4.634
	CRR073310	Second white 2	3.877
	CRR073311	Second white 3	1.545
	CRR073312	Silver flowering 1	1.988
	CRR073313	Silver flowering 2	1.435
	CRR073314	Silver flowering 3	1.432
	CRR073315	Gold flowering 1	18.251
	CRR073316	Gold flowering 2	18.147
	CRR073317	Gold flowering 3	13.275
	CRR073318	Tawny withering 1	19.334
	CRR073319	Tawny withering 2	19.372
	CRR073320	Tawny withering 3	18.895