Gene detail

Detail information of GWHGAAZE026116

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP07897.1	0	unnamed protein product [Coffea canephora]
COG	YP_003709124.1	2E-10	hypothetical protein wcw_0751
Swissprot	tr\|Q9LEW0\|UBP22_ARATH	0	Ubiquitin carboxyl-terminal hydrolase 22
trEMBL	tr\|A0A068UHX8\|A0A068UHX8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_28 {ECO:0000313\|EMBL:CDP07897.1}
TAIR10	AT5G10790.1	4E-169	ubiquitin-specific protease 22

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	73697803	73700055	-
GWHAAZE00000007	mRNA	73697803	73700055	-
GWHAAZE00000007	exon	73697803	73698581	-
GWHAAZE00000007	exon	73698710	73698828	-
GWHAAZE00000007	exon	73699289	73700055	-
GWHAAZE00000007	CDS	73699289	73700055	-
GWHAAZE00000007	CDS	73698710	73698828	-
GWHAAZE00000007	CDS	73697803	73698581	-

Transcript Sequence
>GWHTAAZE026150 ATGCCCCAAAACAACCCTTGTTGCACAAATCCAGAGCCCTGCAAACACCTCATAGATTACAAGCTTAAACATGGAATCAATGGCTACAAGTTGATCAGTAAGAGCATCAAAACAAACCCATATGGCAAAGCAATGATCTTTCATTCCAAATCTGAAATACCCAGATGCGATTTTTGTTGTGGGTATAAAGGTAGATTATATATTTGTTTGATCTGTTCATCAATCAATTGTTGTTTTCCACCTGAATCAAATCATACCCTATTGCACACAAAATCAGAACCTGGCCATGAGATTGTTGTTGACATGGAAAGGGCTGAGCTTTTCTGTAGTGTGTGTTGTGATCAGGTCTATGATCCTGATTTTGACAAGGCTGTGATGTGCAAATTTGAGATTGGGAATTTGGGTTTTTCAAGAAGTGGGAATCTGAGGTTGAGTAAGAGGAAAAGATTGGATTTTGGGGTGGATTTGGAATCCAAGAATTGGAAAAGATTGGTGGGTGTTAGGGATAGGAGGTTTAAATCTTGTTTTCCATTTGGGTTGAGGGGTTTGAACAATTTGGGGAGTACTTGTTTTATGAATTCTGTTTTGCAAGCTTTGCTTCATGCACCCCCTTTGAGGAATTACTTTCTTGGTGATCGGCACAACCGTGAGACTTGCCGGAAAAGGTGCTCCGATCAGTTATGTTTGGCTTGTGACATTGATGCAATCTTTTCGGCTGTGTTTTCTGGCGATCGGACCCCTTACAGTCCAGCACAGTTTCTCTACAGTTGGTGGCAACTTTCAGAAAACCTTGCTAGTTATGAGCAGCAGGATGCTCATGAATTCTTCATTTCAATGCTTGATAGGATCCATGAGAGAGAGGGCAAAGCTAGAAACTCTCCTAAAGATGATGGAGATTGCCATTGTATTGCTCATAAAGTTTTCTCTGGCCTTTTAAGATCTGACGTCACTTGTACAACTTGTGGATTCACTTCCACAACGTACGATCCTTGTGTGGACATTTCTCTCGATTTGAACACAAACACTTCATCTTCAGCACATCTAACCAACAAACCAAGCAAGCCAACCAATAACAACTGCGAATCCACTCTAGCAGGCTGCTTAGATCTCTTCACGAGGCCTGAAAAATTGGGGTCGGACCAAAAACTTTACTGCCAGAACTGTCGAGAAATGCGCGAAGCACAGAAGCAAATGTCCATCAAAAGACTCCCCTCAGTCTTATGTTTACACATAAAACGCTTTGAACACTCAGCGGCCCGTAAAACTTTGCGGAAAGTCAACCGGCACTTGCAGTTCCCGTTCTCCTTGGACATGAAGCCGTACTTGTCGTTTTCAATCCTTAGGAAGAAATTTGGGAACAGAATCTTTGCTTTTGAGGGCGACGAATCTGATATTTCAACTAAGTTTGAGGTTTTTGCTGTGGTTACTCATTCGGGTATGTTAGAATCGGGCCATTATGTGACATATTTGCGATTAAAAAACCAATGGTACAAGTGTGACGATGCGTGGATCAATGAAGTGGATGAGGAAGTGGTGAGAGCTTCACAGAGCTATTTGATATTTTATGTGCAGAAAACTCTTTACCATAAAGAGATTGAGGATGTTGGTTGCTTACCAATATCCCCACCCGGGGATACGGGTGTTCCAATTGCTGGTTGTTGCTGA

Network for GWHGAAZE026116

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02148.20	zf-UBP	60	120	2.30E-08
PF00443.30	UCH	181	522	2.50E-52

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016579	biological_process	protein deubiquitination
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.921
	SRR3591706	second leaf	13.746
	SRR3591707	mature leaf	19.137
	SRR3591708	Shoot apex	15.910
	SRR3591709	Stem	25.800
	SRR3591710	White floral bud	26.549
	SRR3591711	White flower	30.327
	SRR3591712	Green floral bud	24.242
	SRR3591713	Yellow flower	25.132
SRP173429	SRR8316895	Juvenile bud stage	7.757
	SRR8316896	Juvenile bud stage	11.285
	SRR8316897	Juvenile bud stage	4.949
	SRR8316894	Third green stage	5.588
	SRR8316900	Third green stage	17.157
	SRR8316901	Third green stage	15.187
	SRR8316898	Complete white stage	11.243
	SRR8316899	Complete white stage	31.123
	SRR8316903	Complete white stage	15.620
	SRR8316902	Silver flowering stage	10.758
	SRR8316904	Silver flowering stage	14.110
	SRR8316905	Silver flowering stage	6.604
	SRR8316906	Gold flowering stage	20.196
	SRR8316907	Gold flowering stage	18.139
	SRR8316908	Gold flowering stage	20.468
SRP132670	SRR6706286	Control	15.067
	SRR6706287	Light intensity 50%	15.151
	SRR6706288	Light intensity 20%	15.321
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.194
	CNS0095593	Slightly white alabastrum(diploid) 2	12.112
	CNS0095594	Slightly white alabastrum(diploid) 3	9.531
	CNS0095595	Whole white alabastrum(diploid) 2	11.425
	CNS0095596	Whole white alabastrum(diploid) 3	12.209
	CNS0095597	Whole white alabastrum(diploid) 4	12.404
	CNS0095598	Silvery flower (diploied) 1	11.051
	CNS0095599	Silvery flower (diploied) 2	8.767
	CNS0095600	Silvery flower (diploied) 3	24.023
	CNS0095601	Golden flower (diploid) 1	8.163
	CNS0095602	Golden flower (diploid) 2	23.902
	CNS0095603	Golden flower (diploid) 3	22.544
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.713
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.717
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.700
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.120
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.866
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.315
	CNS0095610	Silvery flower (tetraploid) 1	20.819
	CNS0095611	Silvery flower (tetraploid) 2	18.913
	CNS0095612	Silvery flower (tetraploid) 3	32.156
	CNS0095613	Golden flower (tetraploid) 1	14.562
	CNS0095614	Golden flower (tetraploid) 2	21.277
	CNS0095615	Golden flower (tetraploid) 3	29.305
CRA001975	CRR073297	Stem 1	17.788
	CRR073298	Stem 2	16.608
	CRR073299	Stem 3	17.475
	CRR073300	Leaf 1	26.062
	CRR073301	Leaf 2	21.675
	CRR073302	Leaf 3	18.184
	CRR073303	Juvenile bud 1	25.051
	CRR073304	Juvenile bud 2	17.611
	CRR073305	Juvenile bud 3	21.934
	CRR073306	Third green 1	18.694
	CRR073307	Third green 2	16.099
	CRR073308	Third green 3	17.112
	CRR073309	Second white 1	15.744
	CRR073310	Second white 2	17.701
	CRR073311	Second white 3	20.308
	CRR073312	Silver flowering 1	18.131
	CRR073313	Silver flowering 2	18.630
	CRR073314	Silver flowering 3	15.443
	CRR073315	Gold flowering 1	13.058
	CRR073316	Gold flowering 2	12.824
	CRR073317	Gold flowering 3	8.749
	CRR073318	Tawny withering 1	26.251
	CRR073319	Tawny withering 2	21.498
	CRR073320	Tawny withering 3	19.861