Detail information of GWHGAAZE026121


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011080213.10PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X1 [Sesamum indicum]
Swissprottr|Q6K687|C3H18_ORYSJ0Zinc finger CCCH domain-containing protein 18
trEMBLtr|A0A0A0LSP5|A0A0A0LSP5_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN63006.1}
TAIR10AT2G24830.12E-119zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7377797073784200+
GWHAAZE00000007mRNA7377797073784200+
GWHAAZE00000007exon7377797073778095+
GWHAAZE00000007exon7377939073779704+
GWHAAZE00000007exon7378264973782709+
GWHAAZE00000007exon7378317373784200+
GWHAAZE00000007CDS7377797073778095+
GWHAAZE00000007CDS7377939073779704+
GWHAAZE00000007CDS7378264973782709+
GWHAAZE00000007CDS7378317373784200+
Transcript Sequence

Network for GWHGAAZE026121

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF18044.2zf-CCCH_41481682.30E-06
PF01585.24G-patch2973384.90E-12
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding
GO:0003676molecular_functionnucleic acid binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE026121.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3051015202530354045505560Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.356
SRR3591706second leaf16.264
SRR3591707mature leaf19.382
SRR3591708Shoot apex26.385
SRR3591709Stem23.695
SRR3591710White floral bud28.639
SRR3591711White flower33.123
SRR3591712Green floral bud21.398
SRR3591713Yellow flower32.830
SRP173429 SRR8316895Juvenile bud stage 17.188
SRR8316896Juvenile bud stage 24.321
SRR8316897Juvenile bud stage 9.693
SRR8316894Third green stage 9.861
SRR8316900Third green stage 23.628
SRR8316901Third green stage 27.853
SRR8316898Complete white stage 16.472
SRR8316899Complete white stage 37.024
SRR8316903Complete white stage 22.606
SRR8316902Silver flowering stage17.632
SRR8316904Silver flowering stage23.531
SRR8316905Silver flowering stage12.421
SRR8316906Gold flowering stage 42.478
SRR8316907Gold flowering stage 37.480
SRR8316908Gold flowering stage 42.908
SRP132670SRR6706286Control32.439
SRR6706287Light intensity 50%33.351
SRR6706288Light intensity 20%32.715
CNP0000432CNS0095592Slightly white alabastrum(diploid) 126.167
CNS0095593Slightly white alabastrum(diploid) 228.928
CNS0095594Slightly white alabastrum(diploid) 326.860
CNS0095595Whole white alabastrum(diploid) 225.815
CNS0095596Whole white alabastrum(diploid) 321.458
CNS0095597Whole white alabastrum(diploid) 423.295
CNS0095598Silvery flower (diploied) 134.731
CNS0095599Silvery flower (diploied) 233.404
CNS0095600Silvery flower (diploied) 338.188
CNS0095601Golden flower (diploid) 130.140
CNS0095602Golden flower (diploid) 239.662
CNS0095603Golden flower (diploid) 338.006
CNS0095604Slightly white alabastrum(tetraploid) 137.194
CNS0095605Slightly white alabastrum(tetraploid) 229.424
CNS0095606Slightly white alabastrum(tetraploid) 348.453
CNS0095607Whole white alabastrum(tetraploid) 125.609
CNS0095608Whole white alabastrum(tetraploid) 224.031
CNS0095609Whole white alabastrum(tetraploid) 338.707
CNS0095610Silvery flower (tetraploid) 153.014
CNS0095611Silvery flower (tetraploid) 241.597
CNS0095612Silvery flower (tetraploid) 347.109
CNS0095613Golden flower (tetraploid) 146.800
CNS0095614Golden flower (tetraploid) 257.090
CNS0095615Golden flower (tetraploid) 338.989
CRA001975CRR073297Stem 126.089
CRR073298Stem 228.078
CRR073299Stem 325.959
CRR073300Leaf 131.136
CRR073301Leaf 230.289
CRR073302Leaf 327.332
CRR073303Juvenile bud 123.894
CRR073304Juvenile bud 223.949
CRR073305Juvenile bud 323.769
CRR073306Third green 120.109
CRR073307Third green 218.094
CRR073308Third green 322.131
CRR073309Second white 112.546
CRR073310Second white 220.391
CRR073311Second white 321.089
CRR073312Silver flowering 124.532
CRR073313Silver flowering 219.453
CRR073314Silver flowering 321.043
CRR073315Gold flowering 127.457
CRR073316Gold flowering 232.078
CRR073317Gold flowering 317.867
CRR073318Tawny withering 125.125
CRR073319Tawny withering 231.053
CRR073320Tawny withering 327.601