Detail information of GWHGAAZE026139


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009590370.11.99E-140PREDICTED: zinc finger protein CONSTANS-LIKE 4-like [Nicotiana tomentosiformis]
Swissprottr|Q940T9|COL4_ARATH1E-95Zinc finger protein CONSTANS-LIKE 4
trEMBLtr|M1CVB0|M1CVB0_SOLTU5E-136Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400075520}
TAIR10AT5G24930.13E-74CONSTANS-like 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7415083374152551-
GWHAAZE00000007mRNA7415083374152551-
GWHAAZE00000007exon7415083374151153-
GWHAAZE00000007exon7415184474152551-
GWHAAZE00000007CDS7415184474152551-
GWHAAZE00000007CDS7415083374151153-
Transcript Sequence

Network for GWHGAAZE026139

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00643.25zf-B_box3463.00E-06
PF00643.25zf-B_box47901.50E-05
PF06203.15CCT2793217.90E-18
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-CO-like

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf383.699
SRR3591706second leaf276.575
SRR3591707mature leaf313.883
SRR3591708Shoot apex394.852
SRR3591709Stem262.558
SRR3591710White floral bud182.017
SRR3591711White flower227.942
SRR3591712Green floral bud105.044
SRR3591713Yellow flower286.359
SRP173429 SRR8316895Juvenile bud stage 314.765
SRR8316896Juvenile bud stage 349.186
SRR8316897Juvenile bud stage 267.538
SRR8316894Third green stage 54.035
SRR8316900Third green stage 123.128
SRR8316901Third green stage 169.586
SRR8316898Complete white stage 72.831
SRR8316899Complete white stage 356.162
SRR8316903Complete white stage 116.530
SRR8316902Silver flowering stage89.586
SRR8316904Silver flowering stage82.452
SRR8316905Silver flowering stage65.087
SRR8316906Gold flowering stage 305.048
SRR8316907Gold flowering stage 257.589
SRR8316908Gold flowering stage 304.767
SRP132670SRR6706286Control193.756
SRR6706287Light intensity 50%164.337
SRR6706288Light intensity 20%168.503
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1215.230
CNS0095593Slightly white alabastrum(diploid) 2244.946
CNS0095594Slightly white alabastrum(diploid) 3241.784
CNS0095595Whole white alabastrum(diploid) 2212.202
CNS0095596Whole white alabastrum(diploid) 383.782
CNS0095597Whole white alabastrum(diploid) 4131.112
CNS0095598Silvery flower (diploied) 1397.858
CNS0095599Silvery flower (diploied) 2426.008
CNS0095600Silvery flower (diploied) 3284.336
CNS0095601Golden flower (diploid) 1475.403
CNS0095602Golden flower (diploid) 2486.573
CNS0095603Golden flower (diploid) 3466.309
CNS0095604Slightly white alabastrum(tetraploid) 1115.501
CNS0095605Slightly white alabastrum(tetraploid) 2105.126
CNS0095606Slightly white alabastrum(tetraploid) 3237.216
CNS0095607Whole white alabastrum(tetraploid) 193.675
CNS0095608Whole white alabastrum(tetraploid) 254.559
CNS0095609Whole white alabastrum(tetraploid) 3112.886
CNS0095610Silvery flower (tetraploid) 1253.113
CNS0095611Silvery flower (tetraploid) 2268.890
CNS0095612Silvery flower (tetraploid) 333.076
CNS0095613Golden flower (tetraploid) 1193.703
CNS0095614Golden flower (tetraploid) 2229.309
CNS0095615Golden flower (tetraploid) 3345.677
CRA001975CRR073297Stem 1409.500
CRR073298Stem 2412.259
CRR073299Stem 3489.953
CRR073300Leaf 1386.483
CRR073301Leaf 2509.740
CRR073302Leaf 3311.100
CRR073303Juvenile bud 1374.316
CRR073304Juvenile bud 2283.571
CRR073305Juvenile bud 3514.590
CRR073306Third green 1295.177
CRR073307Third green 2251.894
CRR073308Third green 3219.165
CRR073309Second white 1218.309
CRR073310Second white 2195.424
CRR073311Second white 3163.862
CRR073312Silver flowering 1177.313
CRR073313Silver flowering 2184.569
CRR073314Silver flowering 3104.286
CRR073315Gold flowering 1523.846
CRR073316Gold flowering 2555.416
CRR073317Gold flowering 3533.627
CRR073318Tawny withering 1411.293
CRR073319Tawny withering 2405.906
CRR073320Tawny withering 3346.448