Gene detail

Detail information of GWHGAAZE026152

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271743.2	0	PREDICTED: histidine kinase 5 [Vitis vinifera]
COG	YP_922870.1	9E-64	ATPase domain-containing protein
Swissprot	tr\|Q3S4A7\|AHK5_ARATH	0	Histidine kinase 5
trEMBL	tr\|A0A061GQ66\|A0A061GQ66_THECC	0	Histidine kinase cytokinin receptor isoform 2 {ECO:0000313\|EMBL:EOY29254.1}
TAIR10	AT5G10720.1	0	histidine kinase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	74363270	74371476	+
GWHAAZE00000007	mRNA	74363270	74371476	+
GWHAAZE00000007	exon	74363270	74363989	+
GWHAAZE00000007	exon	74364722	74364778	+
GWHAAZE00000007	exon	74364950	74365177	+
GWHAAZE00000007	exon	74365487	74365580	+
GWHAAZE00000007	exon	74366048	74366254	+
GWHAAZE00000007	exon	74366592	74366722	+
GWHAAZE00000007	exon	74367459	74367508	+
GWHAAZE00000007	exon	74368229	74368593	+
GWHAAZE00000007	exon	74368999	74369102	+
GWHAAZE00000007	exon	74369408	74370118	+
GWHAAZE00000007	exon	74370666	74370845	+
GWHAAZE00000007	exon	74371354	74371476	+
GWHAAZE00000007	CDS	74363270	74363989	+
GWHAAZE00000007	CDS	74364722	74364778	+
GWHAAZE00000007	CDS	74364950	74365177	+
GWHAAZE00000007	CDS	74365487	74365580	+
GWHAAZE00000007	CDS	74366048	74366254	+
GWHAAZE00000007	CDS	74366592	74366722	+
GWHAAZE00000007	CDS	74367459	74367508	+
GWHAAZE00000007	CDS	74368229	74368593	+
GWHAAZE00000007	CDS	74368999	74369102	+
GWHAAZE00000007	CDS	74369408	74370118	+
GWHAAZE00000007	CDS	74370666	74370845	+
GWHAAZE00000007	CDS	74371354	74371476	+

Transcript Sequence
>GWHTAAZE026186 ATGGTTTCCGAGATGGAGAACAACAACCAGGCCGAAGAGATGGATGTTGAAGTCCTCTCTTCAATGTGGCCTGAAGACATTAATGAAGCCGGAAAGCAATTCAATGTGGAAAGGCCAGGAGCAGACCAAGATATGTTAGAGGAGGTCACAATCATCGAGGAGCCCAAAATAGTTGATTTCCAGCGTCTCTACGATCTAACAAGTTATAGTGAAAAGGGGTCCTCTCAATTAGCATACTTGGTGAAAAACTGGGAGTATAAGCAGGCTAATGCGGTCCGGCTCTTAAGAGAAGAGCTTGATAACCTTAGCAAGCAACAGCAAGAGGTGGAACTTAAGAAATTGGAAATATTAGAGGAACATCGTTTTGAGGAAGAGTTTGTAGGTGATAAGCGTCCAATATCTATATTGGATGAAGTAGTTTACAATATATGGGGAGAGGTTCCTAAGAGGAGAAATGATGTTGTTGTTCAAGACAAGAAAGTCGAAATAGATGCCGAGTATGATACGGCTGTATATTGGAAGCAGCGATCTATGCATTTAGAGAAATTGTTGGAGGCAAGTGTTCAGCGAGAGCAGATATTATTGGATAAATTGCAGGAAAGTATCGAAAATCTTGAAAGGCAGGGCTCACCGGTGGAAGAACTGTCGCAGATCTTGAAAAGAGCCGATAATTTCTTGCATTTTGTTCTTCAAAATGCACCAGTCGTCATTGGTCATCAGGATAGTGAGTTGCGCTACCGTTTCATCTATAATCATTTCCCAAGTTTGCGGGAAGAGGACATTATAGGAAAAACAGATGTGGAGATTTTTAAAGGTGGTGGTGTTAGGGAATCTCAAGATTTCAAAAAAGAAGTTTTGGAGCGAGGGTTACCTGCAAAGAGGGAAATCACTTTCGAGACAGAGTTATTTGGGTCCAAGACATTCTTGATATACGTGGAGCCAGTTTTCAGCAAGGCTGGAGAGACTATTGGTGTGAATTATATGGGCATGGACGTAACTGATCAGGTGAGAAAAAGAGAAAAAATGGCAAAGCTTCGAGAGGAAATAGCAGTTCAGAAGGCGAAGGAGACAGAACTTAACAAAACAATTCATATAACAGAGGAAACAATGCGAGCTAAACAAATGCTGGCAACAATGTCACATGAGATAAGATCTCCTCTATCAGGGGTTGTAAGCATGGCCGAGATTCTTTCCACCACAAAGCTTGACAAGGAGCAACGACAACTGCTGAAGGTCATGATATCATCGGGTGATTTGGTTCTTCAACTTATAAATGACATCCTTGACCTTTCCAAGGTGGAGTCAGGTGTTATGAGATTGGAAGCAACAAAATTTAGGCCAAGAGAGGTTGTAAAGCACGTGCTCCAGACTGCTGCAGCTTCACTGCAGAAGATACTAACTTTGGAAGGACAAGTAGCAGATGATGTTCCTATCGAGGTAATCGGAGATGTTCTAAGGATTCGTCAAATTCTCACCAACTTAATCAGCAATGCAATCAAGTTTACCCATGAAGGGAAGGTTGGGATAAAGTTATATGTGGTAGAAGAGCCATCTGCTCTGAAGCAAGAAGAATCGCAGCAGAAGAAAATTTCAGATCAGTCAACAATTTCTGAAAATATATTGAAAGAGGATAAATGCATATCAATTTCTCAAAGTAGCTGTGATCGAAAGGGCTTGAACGGACAGAAAAATGGGGAAGGTCCTTACCAAAATCATTCACTCAATGATGAACCTAAAACCGCCGTTCAAAATGGAGATGCATTACAAGAAGATGTAGAGAACCAACCTCAGCGTCATGAAACAAGGGTGTGGATACGATGTGATGTTCATGACACGGGAATTGGGATACCAGAAAACGCTTTGCCAACTCTTTTCAAGAAATATATGCAAGTCAGTGCTGATACCGCTCGGAAGTATGGTGGGACAGGATTAGGCCTAGCGATCTGCAAACAACTGGTTGAGCTCATGGGGGGTCAACTCACAGTGTCAAGCCAAGAGCACCACGGATCTATTTTTACATTCATACTTCCTTACAGAGTTTCACCTATGTGTGATAGTTCTGACGATCCCGATGAACTCTCAGATATGGTTGACCATGATGCCACTGATATGAACGATGACGATATGACTACTGGATTCTTCCAGTTCCAACCTCGGACTTTGGGTACATTATTCTCATCCAACGGTTCTACCAGAACCCAATTATTAGCACCAAACAGTTTAGGGCTCAATCCCTTACATAGAATTAATGGATTCTCAGAAGATTCCTATTCATTTCCAACTAATAGTGAAGATGCTTGTTCAGTATCTGGTGCTGCTGAGGCGCCACAAGAAAGTGAAAGTTCTTCGAGGCCTAACCCAGAAAATGATCATAACAAAAATGCCATCAGTGAAGATAAGCAGAATCATTGCATGCCAGATGCAGGTCATATTAAAGAGATAAGACTTCCTCAAGACCCGAGTCAGATGCGAGCAAAATCTGACTACAGTCCAGAAGGTCCAAAAGCGAAAATGAAATCTAAGATTCTTCTTGTGGAGGATAACAAGATTAATGTGATGGTAACAAGGTCGATGATGAAGCAATTGGGCCATGAGATAGATGTTGTTAATAATGGGGCTGAAGCTGTGCGTGCAGTTCAGCGTGGTAATTATAGTCTGGTTCTGATGGATGTATGCATGCCAGTCATGAATGGACTTCAAGCTACAAGAATAATTCGTTCCTTCGAGGAAACTGGTAATTGGAATGCTGCAGCTGAGGCTGGAATCGAGCACCAGTCCACTGCTTCAGATTCGTCTACAAATGGTCAAGAACTTAAACTATCAATGAAGCGGATTCCCATTGTTGCGATGACAGCAAATGCATTGTCGGAGAGTGCAGATGAGTGCTATGCCAACGGTATGGACTCATTTGTTTCAAAGCCAGTTACTTTTCAAAACTTAAAACAATGTCTCCAACAATATTTACCTTAA

Network for GWHGAAZE026152

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00512.26	HisKA	373	436	3.40E-17
PF02518.27	HATPase_c	482	678	1.10E-27
PF00072.25	Response_reg	842	910	4.40E-13

Protein Sequence

>GWHPAAZE026170
MVSEMENNNQAEEMDVEVLSSMWPEDINEAGKQFNVERPGADQDMLEEVTIIEEPKIVDFQRLYDLTSYSEKGSSQLAYLVKNWEYKQANAVRLLREELDNLSKQQQEVELKKLEILEEHRFEEEFVGDKRPISILDEVVYNIWGEVPKRRNDVVVQDKKVEIDAEYDTAVYWKQRSMHLEKLLEASVQREQILLDKLQESIENLERQGSPVEELSQILKRADNFLHFVLQNAPVVIGHQDSELRYRFIYNHFPSLREEDIIGKTDVEIFKGGGVRESQDFKKEVLERGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDKEQRQLLKVMISSGDLVLQLINDILDLSKVESGVMRLEATKFRPREVVKHVLQTAAASLQKILTLEGQVADDVPIEVIGDVLRIRQILTNLISNAIKFTHEGKVGIKLYVVEEPSALKQEESQQKKISDQSTISENILKEDKCISISQSSCDRKGLNGQKNGEGPYQNHSLNDEPKTAVQNGDALQEDVENQPQRHETRVWIRCDVHDTGIGIPENALPTLFKKYMQVSADTARKYGGTGLGLAICKQLVELMGGQLTVSSQEHHGSIFTFILPYRVSPMCDSSDDPDELSDMVDHDATDMNDDDMTTGFFQFQPRTLGTLFSSNGSTRTQLLAPNSLGLNPLHRINGFSEDSYSFPTNSEDACSVSGAAEAPQESESSSRPNPENDHNKNAISEDKQNHCMPDAGHIKEIRLPQDPSQMRAKSDYSPEGPKAKMKSKILLVEDNKINVMVTRSMMKQLGHEIDVVNNGAEAVRAVQRGNYSLVLMDVCMPVMNGLQATRIIRSFEETGNWNAAAEAGIEHQSTASDSSTNGQELKLSMKRIPIVAMTANALSESADECYANGMDSFVSKPVTFQNLKQCLQQYLP

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0007165	biological_process	signal transduction
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0016310	biological_process	phosphorylation
GO:0000155	molecular_function	phosphorelay sensor kinase activity
GO:0016772	molecular_function	transferase activity, transferring phosphorus-containing groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.647
	SRR3591706	second leaf	1.808
	SRR3591707	mature leaf	0.784
	SRR3591708	Shoot apex	1.297
	SRR3591709	Stem	0.866
	SRR3591710	White floral bud	19.290
	SRR3591711	White flower	11.253
	SRR3591712	Green floral bud	5.868
	SRR3591713	Yellow flower	10.111
SRP173429	SRR8316895	Juvenile bud stage	2.223
	SRR8316896	Juvenile bud stage	3.277
	SRR8316897	Juvenile bud stage	1.038
	SRR8316894	Third green stage	2.744
	SRR8316900	Third green stage	13.019
	SRR8316901	Third green stage	11.378
	SRR8316898	Complete white stage	8.859
	SRR8316899	Complete white stage	15.660
	SRR8316903	Complete white stage	16.767
	SRR8316902	Silver flowering stage	5.947
	SRR8316904	Silver flowering stage	11.096
	SRR8316905	Silver flowering stage	4.413
	SRR8316906	Gold flowering stage	10.891
	SRR8316907	Gold flowering stage	9.690
	SRR8316908	Gold flowering stage	19.167
SRP132670	SRR6706286	Control	8.704
	SRR6706287	Light intensity 50%	11.004
	SRR6706288	Light intensity 20%	11.619
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.857
	CNS0095593	Slightly white alabastrum(diploid) 2	4.746
	CNS0095594	Slightly white alabastrum(diploid) 3	2.705
	CNS0095595	Whole white alabastrum(diploid) 2	5.823
	CNS0095596	Whole white alabastrum(diploid) 3	6.601
	CNS0095597	Whole white alabastrum(diploid) 4	8.192
	CNS0095598	Silvery flower (diploied) 1	2.496
	CNS0095599	Silvery flower (diploied) 2	3.850
	CNS0095600	Silvery flower (diploied) 3	4.128
	CNS0095601	Golden flower (diploid) 1	1.911
	CNS0095602	Golden flower (diploid) 2	2.006
	CNS0095603	Golden flower (diploid) 3	2.102
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.404
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.614
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.435
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.252
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.899
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.150
	CNS0095610	Silvery flower (tetraploid) 1	4.002
	CNS0095611	Silvery flower (tetraploid) 2	2.892
	CNS0095612	Silvery flower (tetraploid) 3	6.982
	CNS0095613	Golden flower (tetraploid) 1	1.271
	CNS0095614	Golden flower (tetraploid) 2	5.554
	CNS0095615	Golden flower (tetraploid) 3	2.405
CRA001975	CRR073297	Stem 1	3.537
	CRR073298	Stem 2	2.972
	CRR073299	Stem 3	1.844
	CRR073300	Leaf 1	10.351
	CRR073301	Leaf 2	8.292
	CRR073302	Leaf 3	4.841
	CRR073303	Juvenile bud 1	6.719
	CRR073304	Juvenile bud 2	7.986
	CRR073305	Juvenile bud 3	7.378
	CRR073306	Third green 1	3.502
	CRR073307	Third green 2	4.413
	CRR073308	Third green 3	5.485
	CRR073309	Second white 1	1.595
	CRR073310	Second white 2	2.052
	CRR073311	Second white 3	0.877
	CRR073312	Silver flowering 1	0.056
	CRR073313	Silver flowering 2	0.328
	CRR073314	Silver flowering 3	0.304
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.309
	CRR073319	Tawny withering 2	0.057
	CRR073320	Tawny withering 3	0.025