Gene detail

Detail information of GWHGAAZE026157

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271840.2	0	PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Vitis vinifera]
Swissprot	tr\|Q9SJA1\|UBP19_ARATH	0	Ubiquitin carboxyl-terminal hydrolase 19
trEMBL	tr\|K4CMC5\|K4CMC5_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc08g069050.2.1}
TAIR10	AT2G24640.1	7E-177	ubiquitin-specific protease 19

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	74461216	74474491	+
GWHAAZE00000007	mRNA	74461216	74474491	+
GWHAAZE00000007	exon	74461216	74461466	+
GWHAAZE00000007	exon	74464593	74464943	+
GWHAAZE00000007	exon	74465086	74465171	+
GWHAAZE00000007	exon	74465276	74465438	+
GWHAAZE00000007	exon	74465578	74465701	+
GWHAAZE00000007	exon	74469193	74469350	+
GWHAAZE00000007	exon	74470201	74470285	+
GWHAAZE00000007	exon	74470614	74470829	+
GWHAAZE00000007	exon	74472636	74472686	+
GWHAAZE00000007	exon	74473167	74473228	+
GWHAAZE00000007	exon	74473537	74474491	+
GWHAAZE00000007	CDS	74461216	74461466	+
GWHAAZE00000007	CDS	74464593	74464943	+
GWHAAZE00000007	CDS	74465086	74465171	+
GWHAAZE00000007	CDS	74465276	74465438	+
GWHAAZE00000007	CDS	74465578	74465701	+
GWHAAZE00000007	CDS	74469193	74469350	+
GWHAAZE00000007	CDS	74470201	74470285	+
GWHAAZE00000007	CDS	74470614	74470829	+
GWHAAZE00000007	CDS	74472636	74472686	+
GWHAAZE00000007	CDS	74473167	74473228	+
GWHAAZE00000007	CDS	74473537	74474491	+

Transcript Sequence
>GWHTAAZE026191 ATGCATGTCTCTGGAGGATTTCCACTCGATCTCAATTGGTTTCTTCAATTCATTCTCACAGCTTTCATTATTTCCCTAGGGTTGCTTTACCTCGTCAAGAACACCGCCTCAAAATACTTTGTCGTCGACTCCAATTTCGACTCTTCTTCGCCCGTCAAAATGCCCGGTTATGATGAAAATGGAGATATTTGCGCTGTTTGCAGTAATTACACCAAGAAGCAGTGTTCTGGATGCAAAATGGTTCGATACTGCTCGGAAGCTTGCCAAAGAACCCACTGGAACACTGGGCACAAGGCAAAATGTAAGGATCTTCGATTATCTGGTAAAGTAAATTCAGTACAATCTGCATCTATGTCGAGAGAAAGAGGAGCTTTAACTGCAGCTCAGTCAGATACTAACAGTGGAACCTCTAAGATTCTCATCAAGAAGGTAAATAACCTTTTTTTTTTCTTTTCTGGAAACCATTTCCTTTTGACAGGATTATGCTCCCATTTCTGCAATTACATTTTTCAGATTCTGTTCCCCTACGAGGAATTTCTGGAACTTTTTAACTGGGAAAAGCGAGACTTCCCTCCTTGTGGCCTTTTGAATTGTGGAAACAGCTGCTTTGCCAATGTAGTTCTACAATGTCTAACGTACACCCGCCCTCTTGTTGCCTACTTGTTGAAGAAAGGCCACCGGAGAGAATGCAGGAGGAATGATTGGTGCTTTCTGTGTGAATTCGAAATCCATGTGGAAAGAGCCAGCAAAAGTATGCAGGCCTTTTCACCAATCAACATTCTGTCACGATTACCAAATATTGGTGGGAATCTTGGCTATGGAAAACAAGAGGATGCCCATGAATTCATGAGGTTTGTCATTGATACAATGCAATCAGTGTGCCTGGATGAATTTGGTGGCGAAAAGGCTGTTCATCCTACCTCTCAAGAGACTACCCTTATTCAACATATATTTGGTGGCCACCTCCAATCTCAGGTGATATGCACAAAGTGCAATAATGTTTCAAACCAGTTTGAAAATATGATGGACTTAACTGTTGAAATCCATGGGGATGCTGGATCTTTGGAGGAATGCTTAGATCAATTCACAGCGAGAGAAGATCTTCATGGAGATAATATGTACAAATGTGATGGATGCAATGAGTATGTTCAGGCGTGGAAGCGCCTTACCATCCGATGGGCTCCAAATATTCTTACAATTGCCTTAAAACGGTTTCAGAGTGGAAGATTTGGCAAACTGAATAAGAGGGTGACATTCCCTGAGACTTTGAATCTTAGTCGTTACATGAGCGAAGAAGCTGGAGATGGTAGTGATGTTTACAGGCTATATGCAGTTGTTGTCCATGTTGACATGCTCAATGCTTCATTTTTCGGCCACTACATTTGTTATACCAAGGATTTTTGTGGAAATTGGTACAGGATTGATGACGATAAGTCGTCTCCTCCTCCGGTCGACGTTCCTCAAGATTCAGAGAGATGGTGGTTGGTTAATGGTGTTGAATTGGATGAGGTGCTTTCTCAGGGAGCTTATATGCTATTGTATAGCAGGGTTTGTCCCCGACCAACATGCTTAAATCCCCTTGAACCTGAAGAAAGAGAGGAGAAGATGGAGGAAGCGGCCAAAGAAAACAAACTGGCGCCTTCCCCACCACCACCTATAAATGGCTCTGATACAGAGTTGATTGGTACTGCTAGCGTATCTGATTCTCTGATATCTGATAACAGTTCACAATCAACGACCGAAAATGTCATAGATAAGGCAAATATCCAGGCAAGTTCATCAGTTTCGAAGGATATCGAAGTTCATGAAAATGGGGGTTGCACTTTTAGTGCTGCAGCTGAAGGAACTGTTTGTCCTGTAGAAGACGACCATAGACTACTTACTGACATTAAAATTGGAAAGGGAGCTGACAAAAGCAGTAATGTCGAAAAAGGTGTTCTAATGGATTCGGAAATGACAACTGAGAATCATGTCGAGGAAAAGGGTGAAGAAGCTTCCCATGATGTTTCTATTGGTACATTAAGCTCGGATGAAGTCATGGAAGAAACAAATTCTGAGCTAGAAATGGTCAAATCCAGAAAGGGATTACTGGCTTCAAGTGGAGCTAGCCATGCAGCTGCGAAACTACAGGGAAAAAATTCTTCCAGAGTAAAATCGAGGCCACTTTTTGCTCCTGGTTTCCTTAAGCGCCCACGGACCAGAGATATGAAACGAGATGGAAATACCCCCGCAGCAGAAATTGGTGAATCTTTTGCCGCTTGTGACCTCAATGGTCAAAGTAATGGATCCATAAAACCTGGTTTACCTTATCAAAATGGTAGCAAGGAAGGAAAATCTCATTTTGATTCTGGTATTTCATCTTCTAATTTTCTTGAGAAACAAACAGTGAAGTCGGGGGATGTGGATCGGATGGTTGCTATCAAATATGGTAGCCTCCACAACGGAGATTCTGTGAATAACATTGTGGCTGATGGGCCATTCCCTACATGCGACGGGGAGTAG

Network for GWHGAAZE026157

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01753.19	zf-MYND	64	101	2.00E-09
PF00443.30	UCH	193	514	3.40E-40

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0016579	biological_process	protein deubiquitination
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.233
	SRR3591706	second leaf	11.464
	SRR3591707	mature leaf	11.926
	SRR3591708	Shoot apex	15.395
	SRR3591709	Stem	18.151
	SRR3591710	White floral bud	22.986
	SRR3591711	White flower	27.350
	SRR3591712	Green floral bud	20.474
	SRR3591713	Yellow flower	24.987
SRP173429	SRR8316895	Juvenile bud stage	12.138
	SRR8316896	Juvenile bud stage	15.914
	SRR8316897	Juvenile bud stage	8.425
	SRR8316894	Third green stage	6.928
	SRR8316900	Third green stage	15.183
	SRR8316901	Third green stage	14.505
	SRR8316898	Complete white stage	7.363
	SRR8316899	Complete white stage	20.345
	SRR8316903	Complete white stage	12.834
	SRR8316902	Silver flowering stage	11.306
	SRR8316904	Silver flowering stage	16.151
	SRR8316905	Silver flowering stage	6.549
	SRR8316906	Gold flowering stage	22.493
	SRR8316907	Gold flowering stage	23.379
	SRR8316908	Gold flowering stage	23.866
SRP132670	SRR6706286	Control	17.998
	SRR6706287	Light intensity 50%	18.473
	SRR6706288	Light intensity 20%	18.428
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.549
	CNS0095593	Slightly white alabastrum(diploid) 2	9.025
	CNS0095594	Slightly white alabastrum(diploid) 3	10.999
	CNS0095595	Whole white alabastrum(diploid) 2	8.239
	CNS0095596	Whole white alabastrum(diploid) 3	6.288
	CNS0095597	Whole white alabastrum(diploid) 4	7.966
	CNS0095598	Silvery flower (diploied) 1	8.873
	CNS0095599	Silvery flower (diploied) 2	9.654
	CNS0095600	Silvery flower (diploied) 3	21.433
	CNS0095601	Golden flower (diploid) 1	9.893
	CNS0095602	Golden flower (diploid) 2	19.533
	CNS0095603	Golden flower (diploid) 3	20.402
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.997
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.413
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.957
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.340
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.150
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.305
	CNS0095610	Silvery flower (tetraploid) 1	20.763
	CNS0095611	Silvery flower (tetraploid) 2	18.760
	CNS0095612	Silvery flower (tetraploid) 3	24.685
	CNS0095613	Golden flower (tetraploid) 1	12.013
	CNS0095614	Golden flower (tetraploid) 2	16.116
	CNS0095615	Golden flower (tetraploid) 3	23.585
CRA001975	CRR073297	Stem 1	13.855
	CRR073298	Stem 2	10.148
	CRR073299	Stem 3	10.566
	CRR073300	Leaf 1	12.313
	CRR073301	Leaf 2	9.921
	CRR073302	Leaf 3	11.275
	CRR073303	Juvenile bud 1	7.905
	CRR073304	Juvenile bud 2	10.110
	CRR073305	Juvenile bud 3	10.062
	CRR073306	Third green 1	12.209
	CRR073307	Third green 2	12.065
	CRR073308	Third green 3	13.515
	CRR073309	Second white 1	11.535
	CRR073310	Second white 2	13.149
	CRR073311	Second white 3	13.632
	CRR073312	Silver flowering 1	9.547
	CRR073313	Silver flowering 2	7.797
	CRR073314	Silver flowering 3	10.416
	CRR073315	Gold flowering 1	6.056
	CRR073316	Gold flowering 2	8.758
	CRR073317	Gold flowering 3	4.946
	CRR073318	Tawny withering 1	9.732
	CRR073319	Tawny withering 2	10.158
	CRR073320	Tawny withering 3	8.472