Gene detail

Detail information of GWHGAAZE026166

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010278052.1	0	PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Nelumbo nucifera]
COG	YP_005071944.1	1E-19	cyclic nucleotide-binding protein
Swissprot	tr\|Q8L7Z0\|CNG17_ARATH	0	Probable cyclic nucleotide-gated ion channel 17
trEMBL	tr\|I1K951\|I1K951_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G08170.1}
TAIR10	AT4G30360.1	7E-164	cyclic nucleotide-gated channel 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	74713909	74716573	-
GWHAAZE00000007	mRNA	74713909	74716573	-
GWHAAZE00000007	exon	74713909	74714631	-
GWHAAZE00000007	exon	74714710	74714946	-
GWHAAZE00000007	exon	74715481	74715592	-
GWHAAZE00000007	exon	74716566	74716573	-
GWHAAZE00000007	CDS	74716566	74716573	-
GWHAAZE00000007	CDS	74715481	74715592	-
GWHAAZE00000007	CDS	74714710	74714946	-
GWHAAZE00000007	CDS	74713909	74714631	-

Transcript Sequence
>GWHTAAZE026200 ATGCTACGTTCATACGGGCAGAACTTGTCTACAAGCACGTTTATTGGGGAAACCTCATTTGCTATTCTCATTGCCATCTTGGGACTTGTTCTTTTCGCCCATTTGATTGGAAACATGCAGACATACCTTCAATCTATGACGGTAAGGCTTGAGGAGTGGAGGCTAAAGCGTAGAGACACTGAGGAGTGGATGAGGCATCGCCAACTTCCCCGAGACTTGCAAGAACGTGTCCGCAGATTTGTACAGTACAAGTGGCTTGCTACCAGAGGTGTTGACGAAGAATCAATCCTTCATGCCTTGCCTCCTGATCTCCGTCGAGACATCCAACGCCACCTTTGTCTTGACCTTGTTCGACGTGTACCCTTTTTCTCACAAATGGATGATCAATTACTTGATGCCATATGCGACCGCCTAGTCTCATCTCTAAGCACCCAAGGCACCTACATTGTACGCGAAGGTGACCCAGTAACCGAGATGCTTTTCATTATTAGAGGAGCACTCGAGAGCTCGACCACAAATGGAGGCCGGACCGGTTTCTTTAACTCAATCACTTTAAAACCGGGCGATTTTTGTGGTGAAGAACTCCTCACATGGGCGTTGCTCCCAAAATCAACCCTCAACTTGCCTTCTTCAACAAGAACAGTGAGAGCCCTTAACGAAGTAGAGGCCTTTGCCCTTCGTGCTGAGGATCTCCAATTCGTAGCGAACCAATTTAGACGCTTACATAGTAAAAAGCTTCAACACACTTTCCGTTTTTACTCTCACCATTGGAGGACTTGGGCTGCATGTTTCATTCAAGCTGCATGGAGGAGGTATAAGAGGAGAATGATGGCTAAAAGCTTAAGTTTGAGAGAGAGTTTCGTTTTTCCACACAATGAGCAATCGGGTAGTGGAAATGAAGAGGTAAACATGAAGGCGAAGAATACTTATACAGCGAAGCAAAATTTGGGTGTTACTATATTAGCTTCGAGGTTTGCTGCAAACACGAGGAGAGGCGCACAAAAGATGAAGAGTATCGGTTTGCCCAAGTTACAAAAGCCTGAAGAGCCCGATTTCTCCGCCGAACCAGATGATCGATGA

Network for GWHGAAZE026166

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00027.30	cNMP_binding	145	234	2.40E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05391	CNGC	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.600
	SRR3591706	second leaf	22.190
	SRR3591707	mature leaf	29.590
	SRR3591708	Shoot apex	19.431
	SRR3591709	Stem	26.444
	SRR3591710	White floral bud	33.618
	SRR3591711	White flower	33.179
	SRR3591712	Green floral bud	41.548
	SRR3591713	Yellow flower	22.538
SRP173429	SRR8316895	Juvenile bud stage	18.948
	SRR8316896	Juvenile bud stage	26.825
	SRR8316897	Juvenile bud stage	8.842
	SRR8316894	Third green stage	12.057
	SRR8316900	Third green stage	38.411
	SRR8316901	Third green stage	35.327
	SRR8316898	Complete white stage	17.615
	SRR8316899	Complete white stage	62.432
	SRR8316903	Complete white stage	25.092
	SRR8316902	Silver flowering stage	13.806
	SRR8316904	Silver flowering stage	16.294
	SRR8316905	Silver flowering stage	8.915
	SRR8316906	Gold flowering stage	27.978
	SRR8316907	Gold flowering stage	25.493
	SRR8316908	Gold flowering stage	19.107
SRP132670	SRR6706286	Control	41.796
	SRR6706287	Light intensity 50%	46.074
	SRR6706288	Light intensity 20%	47.333
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.270
	CNS0095593	Slightly white alabastrum(diploid) 2	32.882
	CNS0095594	Slightly white alabastrum(diploid) 3	26.178
	CNS0095595	Whole white alabastrum(diploid) 2	22.226
	CNS0095596	Whole white alabastrum(diploid) 3	20.641
	CNS0095597	Whole white alabastrum(diploid) 4	27.766
	CNS0095598	Silvery flower (diploied) 1	33.176
	CNS0095599	Silvery flower (diploied) 2	21.560
	CNS0095600	Silvery flower (diploied) 3	24.137
	CNS0095601	Golden flower (diploid) 1	24.415
	CNS0095602	Golden flower (diploid) 2	23.952
	CNS0095603	Golden flower (diploid) 3	23.128
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.249
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.696
	CNS0095606	Slightly white alabastrum(tetraploid) 3	51.061
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.355
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.812
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.130
	CNS0095610	Silvery flower (tetraploid) 1	18.297
	CNS0095611	Silvery flower (tetraploid) 2	20.718
	CNS0095612	Silvery flower (tetraploid) 3	27.228
	CNS0095613	Golden flower (tetraploid) 1	11.598
	CNS0095614	Golden flower (tetraploid) 2	15.614
	CNS0095615	Golden flower (tetraploid) 3	12.412
CRA001975	CRR073297	Stem 1	39.879
	CRR073298	Stem 2	36.233
	CRR073299	Stem 3	27.209
	CRR073300	Leaf 1	60.726
	CRR073301	Leaf 2	60.908
	CRR073302	Leaf 3	41.088
	CRR073303	Juvenile bud 1	48.385
	CRR073304	Juvenile bud 2	34.648
	CRR073305	Juvenile bud 3	63.689
	CRR073306	Third green 1	47.022
	CRR073307	Third green 2	36.396
	CRR073308	Third green 3	43.099
	CRR073309	Second white 1	26.919
	CRR073310	Second white 2	26.648
	CRR073311	Second white 3	26.008
	CRR073312	Silver flowering 1	16.598
	CRR073313	Silver flowering 2	14.990
	CRR073314	Silver flowering 3	14.091
	CRR073315	Gold flowering 1	14.657
	CRR073316	Gold flowering 2	24.643
	CRR073317	Gold flowering 3	19.633
	CRR073318	Tawny withering 1	25.389
	CRR073319	Tawny withering 2	22.561
	CRR073320	Tawny withering 3	26.737